PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65816.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 429aa MW: 43774.2 Da PI: 6.6126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	235	280	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq OWM65816.1 235 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 280 99*********************55......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MQGGMNMNSL LNNGNNNNMS PSHHHQISLQ DLHNPIHGSH SFDPAAGDHD FLDQMFSTIN 60 PSWADLNPAA DGPDPAPDSN GNSIGPFGTH FDESAILASK LRQHQISGGG GSSSTSAAAA 120 AKALLLQQQM LMGRGFERSP SDVPGVDESV QALYNGFAGS LHGGGGGQLL NQSPQFHHPQ 180 GGTPSFGAQG QGTKPAPAAS ASTTTASGGG GNTTNTSGQP RQRVRARRGQ ATDPHSIAER 240 LRRERIAERM KALQELVPNG NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL 300 VADMSSEGAG GGDCNGGGRN GNGSANDSLT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP 360 ISLATAISTA TCHSSRPSAA AHGNPLTASN GDGPTSPSMS VLTVQSAAGA NGGGPDGSSA 420 KDAASVSKS

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MQGGMNMNSL LNNGNNNNMS PSHHHQISLQ DLHNPIHGSH SFDPAAGDHD FLDQMFSTIN  60
PSWADLNPAA DGPDPAPDSN GNSIGPFGTH FDESAILASK LRQHQISGGG GSSSTSAAAA  120
AKALLLQQQM LMGRGFERSP SDVPGVDESV QALYNGFAGS LHGGGGGQLL NQSPQFHHPQ  180
GGTPSFGAQG QGTKPAPAAS ASTTTASGGG GNTTNTSGQP RQRVRARRGQ ATDPHSIAER  240
LRRERIAERM KALQELVPNG NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL  300
VADMSSEGAG GGDCNGGGRN GNGSANDSLT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP  360
ISLATAISTA TCHSSRPSAA AHGNPLTASN GDGPTSPSMS VLTVQSAAGA NGGGPDGSSA  420
KDAASVSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-63	bHLH family protein