PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM64961.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

GRF

Protein Properties

Length: 433aa MW: 47362.3 Da PI: 10.0464

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM64961.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	68.8	7e-22	149	192	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +ep rCrRtDGKkWRC+++v+++ k+CErH++rgr rsrk++e OWM64961.1 149 PEPERCRRTDGKKWRCRKDVIPNRKYCERHINRGRRRSRKPVEV 192 89***************************************985 PP
2	WRC	49.9	5.4e-16	327	362	3	38
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 + rCrRtDGKkWRC r+vl+++k+C H+hrg+++ OWM64961.1 327 DRKRCRRTDGKKWRCYRDVLPDQKYCWQHMHRGSKK 362 667******************************765 PP
3	QLQ	41.1	5.3e-15	82	113	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 FT+aQl +L +Q l+yKyLaa++PvPp+Ll+ OWM64961.1 82 FFTHAQLGELYHQFLVYKYLAARLPVPPHLLL 113 5*****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MVASPACQLS LFTRNSHQLD DAMSDTSGLE AKAGWPGGRG FWTGMIGGVN TVEESGPSVS 60 LRLGIGADES ARSPARGKAG EFFTHAQLGE LYHQFLVYKY LAARLPVPPH LLLRSWKSDA 120 GGFLFPGNWC YAAVGFGRKA LDYMNRMSPE PERCRRTDGK KWRCRKDVIP NRKYCERHIN 180 RGRRRSRKPV EVSKFASPSE TRTASKTTNR DLGHLKADIT VGLRLGTSVS PEVTTENKST 240 PNDNNGCGTS VSAVNSSSSY RADLNNHGKF AGINCTDHRP PSLKTGVGIN NGIKTNELSG 300 LRFSPKSVVQ GRTNPFQPKV VVEPEHDRKR CRRTDGKKWR CYRDVLPDQK YCWQHMHRGS 360 KKLPQARPLG ASVIDCGPLT ISMAANGSDP ANLNTSLSIS TPAASQKDEK SCSTSSSSDS 420 DTTLSETTVV ACE

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MVASPACQLS LFTRNSHQLD DAMSDTSGLE AKAGWPGGRG FWTGMIGGVN TVEESGPSVS  60
LRLGIGADES ARSPARGKAG EFFTHAQLGE LYHQFLVYKY LAARLPVPPH LLLRSWKSDA  120
GGFLFPGNWC YAAVGFGRKA LDYMNRMSPE PERCRRTDGK KWRCRKDVIP NRKYCERHIN  180
RGRRRSRKPV EVSKFASPSE TRTASKTTNR DLGHLKADIT VGLRLGTSVS PEVTTENKST  240
PNDNNGCGTS VSAVNSSSSY RADLNNHGKF AGINCTDHRP PSLKTGVGIN NGIKTNELSG  300
LRFSPKSVVQ GRTNPFQPKV VVEPEHDRKR CRRTDGKKWR CYRDVLPDQK YCWQHMHRGS  360
KKLPQARPLG ASVIDCGPLT ISMAANGSDP ANLNTSLSIS TPAASQKDEK SCSTSSSSDS  420
DTTLSETTVV ACE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-30	GRF family protein