PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM62867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21156.4 Da PI: 7.4423 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54 | 2.2e-17 | 9 | 50 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +ie +s r+ tf kR++g+lKKA+ELS LC++ ++ ii++++ OWM62867.1 9 FIEHNSSRKATFNKRKKGLLKKASELSNLCGVPACAIIYGEH 50 89**************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MRRKVKLAFI EHNSSRKATF NKRKKGLLKK ASELSNLCGV PACAIIYGEH ESETELWPPS 60 PISVRRVISK FHDMSEAEQS KKMMNQENFL LQRITKTEEQ LKKLRKDNKE MEMLNVMYQG 120 LGGLQPPEWL QGMNMLDLNN LEWVIDQMLD KICERQEKVS KTEVGGSNEV MEEAEKAGPE 180 DAST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-42 | M-type_MADS family protein |