PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM62861.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25817.5 Da PI: 10.3809 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.4 | 1.4e-16 | 9 | 51 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i +s r vtfskR++g+lKK + LS+LC++ ++ i+++++ OWM62861.1 9 FITRDSSRRVTFSKRKKGLLKKVSQLSILCGVPACAIVYGQKE 51 6888999*********************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MRKKVKLAFI TRDSSRRVTF SKRKKGLLKK VSQLSILCGV PACAIVYGQK ESQLELWPPS 60 PISVRRVISK FQEMPAMEQS KKMMNQESFL LERVARTEEQ LKKLRKDNRE RKMANMMYRG 120 LDVMLVPGWL EGLILLDLKD LNSVINKTLN QIDQKQEMLG RAGTSKEVVE PEEKAEAPVE 180 ANTLVESMLR EQCFKDLVKL LELAPLPLEK GRTPSSTMWS NPFLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-33 | M-type_MADS family protein |