PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g994730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 404aa MW: 44407.6 Da PI: 8.7381

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g994730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	300	322	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Pd.00g994730.m01 300 ECPQCGAKFSSVTTLVDHVEKvH 322 5*****************99888 PP
2	zf-C2H2	15.3	5.9e-05	339	360	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ L+ H + H Pd.00g994730.m01 339 CPKCSKGFRDPVALVEHVERdH 360 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MLNENSGATS NDPVSCGENF GVDLGFRGFG VLLYPRKARS KKLRTIQSRN KSRDYKISSN 60 LILDCLVAEI ESHLVRPVAA CYLGRHCYVA DCQQIDFLPF TCDSCHQVFC LEHRSYIKHN 120 CPKADRQNVT VVICPLCAKG VHLIPDEDAN ITWERHVNAE CDPSNYEKAT KKKKCPIPGC 180 KELLTFSNTI KCRDCTVDHC LKHRFGPDHK CPGPKKPTAG FPFSGLLSRS RKEVSKPNHA 240 PAASSSKWSN SFLTAASSFR ASAEASVAKL SSELSQKWQI AKDGAGQSSS SGSRNGQLEE 300 CPQCGAKFSS VTTLVDHVEK VHEKGGNRAG VKKMTIDACP KCSKGFRDPV ALVEHVERDH 360 GGGFSSLRSA LAGIQTRLVF VQFERYPSQF LSLSFPSLHP ELSS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MLNENSGATS NDPVSCGENF GVDLGFRGFG VLLYPRKARS KKLRTIQSRN KSRDYKISSN  60
LILDCLVAEI ESHLVRPVAA CYLGRHCYVA DCQQIDFLPF TCDSCHQVFC LEHRSYIKHN  120
CPKADRQNVT VVICPLCAKG VHLIPDEDAN ITWERHVNAE CDPSNYEKAT KKKKCPIPGC  180
KELLTFSNTI KCRDCTVDHC LKHRFGPDHK CPGPKKPTAG FPFSGLLSRS RKEVSKPNHA  240
PAASSSKWSN SFLTAASSFR ASAEASVAKL SSELSQKWQI AKDGAGQSSS SGSRNGQLEE  300
CPQCGAKFSS VTTLVDHVEK VHEKGGNRAG VKKMTIDACP KCSKGFRDPV ALVEHVERDH  360
GGGFSSLRSA LAGIQTRLVF VQFERYPSQF LSLSFPSLHP ELSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-113	C2H2 family protein