PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g969980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 373aa MW: 42118.8 Da PI: 4.8391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g969980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.6e-21	77	130	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k Pd.00g969980.m01 77 KKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 130 5678*************************************************9 PP
2	HD-ZIP_I/II	133.1	1e-42	76	167	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd l ++ +++ ke+++L++e+ Pd.00g969980.m01 76 EKKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDFLLSNYDSILKENHKLKSEVV 167 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MEPCRFLFDP SMTSSACQQG GGNMLFLGNA DHVFRGPRSV MGLMDQESSR RRSFFSTSSS 60 QDELFDEEYY DEQLPEKKRR LTPDQVHMLE KSFETENKLE PERKTQLAKK LGLQPRQVAV 120 WFQNRRARWK TKQLERDYDL LKSSYDFLLS NYDSILKENH KLKSEVVSIN QKLEAKEETS 180 NIKAAAFAPD HAHDDKCDPP VPAGDEMRDA VPISYAAGLQ YSCSVKVEDR LSSGSGGSAV 240 VDEAEGPQLV DSGDSYTFLN EDNVHNNYPH HHHSGVNSEE DDGSDDGRGY FSDVFAAAVE 300 EQLKVEGRGL QWEQVVAKRP DMFHLSSQLF SCTQRDAENG VPEVEREGTS CFALLGLCQL 360 RDTLRLVITC KII

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MEPCRFLFDP SMTSSACQQG GGNMLFLGNA DHVFRGPRSV MGLMDQESSR RRSFFSTSSS  60
QDELFDEEYY DEQLPEKKRR LTPDQVHMLE KSFETENKLE PERKTQLAKK LGLQPRQVAV  120
WFQNRRARWK TKQLERDYDL LKSSYDFLLS NYDSILKENH KLKSEVVSIN QKLEAKEETS  180
NIKAAAFAPD HAHDDKCDPP VPAGDEMRDA VPISYAAGLQ YSCSVKVEDR LSSGSGGSAV  240
VDEAEGPQLV DSGDSYTFLN EDNVHNNYPH HHHSGVNSEE DDGSDDGRGY FSDVFAAAVE  300
EQLKVEGRGL QWEQVVAKRP DMFHLSSQLF SCTQRDAENG VPEVEREGTS CFALLGLCQL  360
RDTLRLVITC KII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-76	HD-ZIP family protein