PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g942050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 365aa MW: 40981.1 Da PI: 5.1415

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g942050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	41	103	1	48
TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+ +++ lG++ +W++Ia+ ++ gRt++++k+ w+++l Pd.00g942050.m01 41 RGPFTKDEEKLIMQLHGILGNRkfvlfltlllvsktifRWAAIASQLP-GRTDNEIKNLWNTHL 103 89********************************************.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MEMHGHFMSR CVRTLQTAGL LRCGKSCRLR WTNYLRPDIK RGPFTKDEEK LIMQLHGILG 60 NRKFVLFLTL LLVSKTIFRW AAIASQLPGR TDNEIKNLWN THLKKRLLLM GIDPQTHKPV 120 DSNCLTSTAP ASLATRHMAQ WESARLEAEA RLSRESSLFG QPPEKSEPDY FLRLWNSEVG 180 EAFRNLTTVD KSACPSPISQ ASSSTKCGSV SAVTTDVGNT LTGSSTMAGD QNEDMEDKIC 240 QTNTEDVGHN ICQTNTEDVG YKICQTNAED LEYKSCQTNT EDMGYKIFQS NTEDVEYKPW 300 RLNTKDVMAG SDSSCSNDLE DSSDTALQLL LNFPINNDMS FLEDNVDDYA TTPARWTPNS 360 FICPL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MEMHGHFMSR CVRTLQTAGL LRCGKSCRLR WTNYLRPDIK RGPFTKDEEK LIMQLHGILG  60
NRKFVLFLTL LLVSKTIFRW AAIASQLPGR TDNEIKNLWN THLKKRLLLM GIDPQTHKPV  120
DSNCLTSTAP ASLATRHMAQ WESARLEAEA RLSRESSLFG QPPEKSEPDY FLRLWNSEVG  180
EAFRNLTTVD KSACPSPISQ ASSSTKCGSV SAVTTDVGNT LTGSSTMAGD QNEDMEDKIC  240
QTNTEDVGHN ICQTNTEDVG YKICQTNAED LEYKSCQTNT EDMGYKIFQS NTEDVEYKPW  300
RLNTKDVMAG SDSSCSNDLE DSSDTALQLL LNFPINNDMS FLEDNVDDYA TTPARWTPNS  360
FICPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	3e-83	MYB family protein