PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g931080.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92150 Da PI: 6.4328 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 26 | 83 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Pd.00g931080.m01 26 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 83 5789****************************************************97 PP | |||||||
2 | START | 161.7 | 5.5e-51 | 162 | 369 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++ Pd.00g931080.m01 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIE 253 7899******************************************************.7777777777***********999999999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++++++a+s+l+p Rdf+++Ry+ +l g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++l Pd.00g931080.m01 254 LIYTQTYAPSTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVL 346 ****************************************999999989999***************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+ + +++++ a+l++ + Pd.00g931080.m01 347 RPLYESSKVVAQRMTIAALRYIR 369 ******************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence |
MAMAVAHHRE SSSGSSINKH LDAGKYVRYT SEQVEALERV YAECPKPSSL RRQQLIRECP 60 ILSNIEPRQI KVWFQNRRCR EKQRKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC 120 ENGYMRQQLH TAPTTDASCD SVVTTPQHSL RDANNPAGLL SIAEETLAEF LSKATGTAVD 180 WVQMPGMKPG PDSVGIFAIS QSCSGVAARA CGLVSLEPTK IAEILKDRPS WFRDCRSLEV 240 FTMFPAGNGG TIELIYTQTY APSTLAPARD FWTLRYTTSL DNGSFVVCER SLSGSGAGPN 300 AASAAQFVRA EMLPSGYLIR PCEGGGSIIH IVDHLNLEAW SVPEVLRPLY ESSKVVAQRM 360 TIAALRYIRQ IAQETSGEVV YSLGRQPAVL RTFSQRLIRG FNDAVNGFSD DGWSLINCDG 420 AEDVIIAVNS TKNLTTLNPA NSLALLGGGV LCAKASMLLQ NVPPAVLVRF LREHRSEWAD 480 FNVDAYSAAS LKAGSYAYPG MRPTRFTGGQ IIMPLGHTIE HEELLEVVRL EGHSLTQEDA 540 FASRDIHLLQ ICSGVDENAV GACSELVFAP IDEMFPDDAP LVPSGFRIIP LDSKTSDSKD 600 TLATHRTLDL TSSLEVGSTT NNAAGELSSF HNTRSVLTIA FQFPFESSLQ ENVATMARQY 660 VRSVISSVQR VAMAISPSGL SPSVGGPKLS PGSPEALTLA HWICQSYSYH VGAELLRPDS 720 LGGDSMLKHL WHHQDAILCC SLKSLPVFIF ANQAGLDMLE TTLVALQDIS LDKIFDECGR 780 KTLCADFAKL MNQGFAHLPA GICMSTMGRH VSYEQAVAWK VLAAEENSVH CLAFSFMNWS 840 FV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |