PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g909310.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 604aa MW: 67145.5 Da PI: 7.6777

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g909310.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd++l+++++ G g+W++ ++ g+ R++k+c++rw +yl Pd.00g909310.m01 14 KGRWTAEEDQILINYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.6	1.8e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l Pd.00g909310.m01 67 RGNISAQEEDIIIKLHASLGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MGRAPCCDKI GLKKGRWTAE EDQILINYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SAQEEDIIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR 120 RPTTTSDQMS SLPTAASNNI PSKRRGGRTS RWAMKKSKTY TTTNSTNYTQ RHNKGQKEIT 180 NIAADDDEAI ALEKKTSLPG PNDNIDTMHH DYMCQKESQE MLLGPHPHND ENKDDDLDES 240 GGIEFDGGLL GTFNELMDNV ELLQKDPNSN GVLTLSDHDH AMGVTYEVDQ SRLTSKPCCA 300 AADNPFSLEP AAVGCWRWGM LKLKYIGLRA FTIIGEQHSF ISSAVKLRCN ARIDNPLSAR 360 ALSCITTFPR SFNSSPSEDD DYSELGSPVS KAPSNPRKLM TEKPEPYMKT NRKKKLSGKP 420 SKSSISSKDV SSKWESSRRA SLDLEVITKG IDLPIHPPDD QEEVTIRITN INSETSDSAV 480 RSMCMSCGSL EGVVRTKADA VDALFSVKDN MGIQSLIRKL NQMVVNDHKW SANLHSRDSA 540 PAVTSKQINA NCDLGLDISR HLGDLRSQIS VKTVCIEDLE YLHNALLHLE AQPDRSGSIP 600 NSDS

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MGRAPCCDKI GLKKGRWTAE EDQILINYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SAQEEDIIIK LHASLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIDTFR  120
RPTTTSDQMS SLPTAASNNI PSKRRGGRTS RWAMKKSKTY TTTNSTNYTQ RHNKGQKEIT  180
NIAADDDEAI ALEKKTSLPG PNDNIDTMHH DYMCQKESQE MLLGPHPHND ENKDDDLDES  240
GGIEFDGGLL GTFNELMDNV ELLQKDPNSN GVLTLSDHDH AMGVTYEVDQ SRLTSKPCCA  300
AADNPFSLEP AAVGCWRWGM LKLKYIGLRA FTIIGEQHSF ISSAVKLRCN ARIDNPLSAR  360
ALSCITTFPR SFNSSPSEDD DYSELGSPVS KAPSNPRKLM TEKPEPYMKT NRKKKLSGKP  420
SKSSISSKDV SSKWESSRRA SLDLEVITKG IDLPIHPPDD QEEVTIRITN INSETSDSAV  480
RSMCMSCGSL EGVVRTKADA VDALFSVKDN MGIQSLIRKL NQMVVNDHKW SANLHSRDSA  540
PAVTSKQINA NCDLGLDISR HLGDLRSQIS VKTVCIEDLE YLHNALLHLE AQPDRSGSIP  600
NSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	9e-76	MYB family protein