PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g901950.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 319aa MW: 35114.2 Da PI: 9.3123 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.6 | 5.1e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++a+ Pd.00g901950.m01 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELNATQREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQAD 99 7******************************************************************************************** PP DUF260 94 lallkee 100 l +k+e Pd.00g901950.m01 100 LYNAKKE 106 *998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELNATQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQADL YNAKKELATY MGPQAMLSIL 120 QPPPTYMPQQ LQGNASSSAV SPYTMSPMMG ISTGPTSGQL MIREPQQQQQ QQQQMFEAQQ 180 LAAAVAAREQ QEMFRSFDQS KQSMQQGQEH VRFNSGFDLS PGSVTVSGFT QMAGAVCNAV 240 SPSLALGSCS KPNSLKGSIR TSNHSRRSCS KSPIQARRAV GVWVPLVDGN FFSSSCLPRF 300 FIQLIFILAV HIFRIQLEI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 9e-83 | LBD family protein |