PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g885570.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 458aa MW: 51227.2 Da PI: 9.6187

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g885570.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.7	2e-15	285	326	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++ i KKA ELS LC+++v++i++ ++ Pd.00g885570.m01 285 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 326 778999*******************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL 60 EEVKQLYALE RDILLESLLV MLFFWLLGFA RLAKECSNYV PVSSLQVRLT DLSFFLNPRD 120 LSLSNKLMWL SLKVQIALNA VVPPPPPSSF MMCDYPSVVE INLELKSGSS NTLSSPPGEK 180 SPCPIGSVNP EKGKESHRKV PLPEEKSHRK KSLCPVGISP SPSEAKKTKI GGKENNKCLP 240 RQTRPGRGDG GSPVGNRKQI VSLRKPREED MVAPRRRSLE LIPNIPNEGT RKMTFRKRKK 300 SIYKKADELS KLCGIDVCLI VYEADQKKGR AVQPETWPLD PTQFKRILNK YKDSKDTSTP 360 GLKRNFDMSD FYEDKKDHDE LTELIASLES KIQVATKKID SMERYMGFAK KQNQSLVREE 420 INHDEQPYQV PALMSPPSLV HYPMLPSAWV SSSESEKS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MHYKSSTKST GDKGLEFCST IATIAAITGI TGLIGCIVGG SNLFPSFFVS APFVQVLVYL  60
EEVKQLYALE RDILLESLLV MLFFWLLGFA RLAKECSNYV PVSSLQVRLT DLSFFLNPRD  120
LSLSNKLMWL SLKVQIALNA VVPPPPPSSF MMCDYPSVVE INLELKSGSS NTLSSPPGEK  180
SPCPIGSVNP EKGKESHRKV PLPEEKSHRK KSLCPVGISP SPSEAKKTKI GGKENNKCLP  240
RQTRPGRGDG GSPVGNRKQI VSLRKPREED MVAPRRRSLE LIPNIPNEGT RKMTFRKRKK  300
SIYKKADELS KLCGIDVCLI VYEADQKKGR AVQPETWPLD PTQFKRILNK YKDSKDTSTP  360
GLKRNFDMSD FYEDKKDHDE LTELIASLES KIQVATKKID SMERYMGFAK KQNQSLVREE  420
INHDEQPYQV PALMSPPSLV HYPMLPSAWV SSSESEKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	300	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	9e-18	M-type_MADS family protein