PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g835260.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1420aa MW: 157464 Da PI: 7.9973 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.5e-07 | 733 | 775 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + q++++++ + Pd.00g835260.m01 733 AWTHQEEESFFAALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 775 6*****************99.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1420 aa Download sequence |
MGHLVNLLQL QTTLFFSNSP TCSSIALKPH TFEYLKANVL TSKCKAFGGG EMDALPHLQA 60 LRKFPREELV AKVVLVRFDS TLLLREQGEE HRFQPNALFT IKYLHQSGAK VVLVSDWSVK 120 TNPRLFVAQS VAEFLSSLLE YKVVPVQCIS QNVVSKREGF EKGDILLLEN LSEFRGEVAN 180 CSKFSQALSS GVDIFVNDYF SRSHKILAST CGVARFCYAN LAGFHFEESL SQLRRATESN 240 TKPHVAIIGG GNLFDKAAAL HSLTSRCDGL VFVGMMSFQI MHALGLPVPL NLVEHGVLKE 300 ALDIVQVAHI RKVQILYPKD FWCKNDHLPK QLEIFPAHRI LDGWVPVDIG PASFVEMKSM 360 LSRCKKVTWI GPVKFRMSNC TKGASELAQM LNQLSQSNCN ITVVGNKACE AMVKESNSTF 420 NFTMIKDASV VWEFLKGRKL PGVMALDRAY PFDIDWSDAY SDPAQHLVVD IGSGNGMFLL 480 GMAKTRKDLN FLGLEINKKL VKRCLDSVHW RGIRNGYFIA TNATSTFRSI ISSYPGKLVL 540 VSIQCPNPDF NEPDHRWSML QRSLVEAVAD LLTANGKVFL QSDIEAVSLR MKEQFQRYGK 600 GKLTVVHEQS FAITNSGWLK DNPFGVQSDW EQHVLARGDP IRLSEDSIRF LFAFLQSQEL 660 VRSILGFSGF FEISISLVCT KLEIGSTVIV NSEAHPHQGG FFVQDGGPGL ATSTSNHVAL 720 QQPVKKPTRQ WAAWTHQEEE SFFAALRQVG KNFEKITCRV QSKNKDQVRH YYYRLVRRMN 780 KLLGPGLYLD SKNSKDTNAA MLRWWSLLEK YSCKASKLHL KPRRFKIFIE ALEHQLLKDR 840 KKSVRKRPSQ GENCPPNAPS TLSNQNRPSG HDNRTVKLVL VDSHNIQKLG PGKASLKRNV 900 NIGVNRSNKG DSSTMKPARQ RRKPGALSSA AYKKWEKAAI AGVSLVADAA EHLERAITDK 960 EVEQDRSAAG QSSTVPVGKV LPPMPAFVQN IDAESGINNC MKLKLQLFPI DDGTRRALEN 1020 DKHNPYLELT LSTRKKISSV LDHLNRKWGN SNVASGELTL FHYSVQRDNL MGYPRWTQDS 1080 IVSAADVYAT IGCPPVFRLR YGWFSNTELG SVGLQTPVAS CSNQAEEPNE INGYICASPN 1140 NNFVGDPTEI TSWHKKEAGD QSTSRHRGDV DDLRSITGTA LSAGVWADSL TNISMGDLLS 1200 GVSHDLDTNC IDPPVAEGSQ CLQQIPFSCD SFDAVIAAHI SRQNKMGCQA TMECHVSSIW 1260 DAEETCDAFS FQKNSVFCQE VSSLSAVAPP GASSAGSDCM VEEIPVVERP IDDPPQGGPT 1320 DECQSDPRIL ESSVKDFNAL TDIYWPESLG PLDLEMPSSK YHSEDFVLSD SLSGLNRLIA 1380 SSLDAFQNCS FFGANKREPT ASVEARETAS FSDFKIGNGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 0.0 | MYB_related family protein |