PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT2G36960.3 | ||||||||
Common Name | TKI1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 744aa MW: 82328.8 Da PI: 6.3382 | ||||||||
Description | TSL-kinase interacting protein 1 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 57 | 99 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + AT2G36960.3 57 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 99 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-10 | 49 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 52 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.52 | 53 | 104 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-6 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-6 | 57 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-5 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016310 | Biological Process | phosphorylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0016301 | Molecular Function | kinase activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 744 aa Download sequence Send to blast |
MLKQFTHYCE MQAELIPEGP NGEGRLSNQN SNPNLLSSAS ISITQFPAKK PTRQWAAWTH 60 QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPD LSLDAKNPKD 120 TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK LFIEALEHQL LKDRRKSIRK RTCQGENLSS 180 ASLGNISSHS RERGLDNRPF KLILSDGQNV KKLGPGRAST KHGESLSVNL GDEKEDTAFG 240 RGGRQRRKQA GYRKWEKAAI DGVSLVADAA EHLERTSIDK DMDDQTDLGP TRYLTGKSPL 300 SLCSAGDVPL SDANMQFSAK LKLQLFPIDE CTRRSLEMDK HNPHLELTLS NRKKISSVLE 360 HLNRKWGSSS CATGELLLFP YNARKETVTC HQRWTHDSFL SAAEVHSMVG SPSVFRLRYG 420 WFVHDASGSI ISQVPTSDPC PSLEDDMNVD RLNEVNMLLT ESGPLSVHST AEQTTSVEPS 480 QGLVCASGVH DRPARSRDDY EPASTSITPL EHLSGGNAQS PGEWADSLTN ISIGDLLSEV 540 PDDIDSDGVD PPATEGSHYL LRDVPFTSDS FDAAIAAHIL RHQNKPSAQL PLTSGSSSLW 600 DDEETRDAFS FQKNRFANST ELASVASPKG VGRVNGEPSQ LVEASSGDEG SYNPHDDGDP 660 MEEGPADPHT MDSPGKTPCG LADVYWPDSL GPLDLDIRSS KYTDDLILSE SLGGLSRLIA 720 TSLDAFQNCS LFGFDNKKDK SNMV |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.27079 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 263886_at | 0.0 | ||||
Expression Atlas | AT2G36960 | - | ||||
AtGenExpress | AT2G36960 | - | ||||
ATTED-II | AT2G36960 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | Arabidopsis thaliana myb/SANT domain protein |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT2G36960.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT2G36960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY064068 | 0.0 | AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds. | |||
GenBank | AY096376 | 0.0 | AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001189693.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | F4IP39 | 0.0 | F4IP39_ARATH; TSL-kinase interacting protein 1 | ||||
STRING | AT2G36960.3 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9633 | 21 | 24 | Representative plant | OGRP2164 | 10 | 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT2G36960.3 |
Entrez Gene | 818270 |
iHOP | AT2G36960 |
wikigenes | AT2G36960 |