PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g824300.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family BBR-BPC
Protein Properties Length: 330aa    MW: 37029.9 Da    PI: 10.2803
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g824300.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind363.83.3e-111203301301
         GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75 
                       mdd  ++e  r+k  yy+              ++ ++l   +++++ms+iaerda+irern+al+ek++a+a+r++a+ qrd+ala+r+ a++
  Pd.00g824300.m01  20 MDDGRQHEngRHKMdYYRgaaspwnmatqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALTEKNEALAAREEALRQRDEALAQRDTAMM 110
                       677666556899988999999999999987653345666..99************************************************** PP

         GAGA_bind  76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
                       erdn+++al +++n+   + p g +v +g+k +++  + +   l++  + ++++++++a+pi+    ea +++++k+ +++k  +++k ++kk
  Pd.00g824300.m01 111 ERDNAFAALHMRDNA--VNFPLGGGVQRGAKRLHHPSN-HSVTLAEAHYSTKDMHITDAFPISVISAEAVKSRQTKRAKENKASRASKPSRKK 200
                       ***********9998..5678899999*******8888.889***********************9999999999977777777777776665 PP

         GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261
                         +e+ +++ ++++   + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS
  Pd.00g824300.m01 201 V-GEDLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMS 290
                       5.666666666666..57*************************************************************************** PP

         GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       +++f++lL++Laa+G+dls p+DLk++WA+HGtn+++ti+
  Pd.00g824300.m01 291 GSVFTRLLSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 330
                       ***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MQSADSRRRG QTLAAHNSKM DDGRQHENGR HKMDYYRGAA SPWNMATQQQ AKEPNALVMN  60
KKIMSIIAER DAAIRERNAA LTEKNEALAA REEALRQRDE ALAQRDTAMM ERDNAFAALH  120
MRDNAVNFPL GGGVQRGAKR LHHPSNHSVT LAEAHYSTKD MHITDAFPIS VISAEAVKSR  180
QTKRAKENKA SRASKPSRKK VGEDLNRQAS SDGIKYKSEW DTHDLGLNLV SFDESTMPVP  240
VCSCTGVPRQ CYKWGNGGWQ SSCCTTHMSM YPLPQMPNKR HARMGGRKMS GSVFTRLLSR  300
LAADGHDLSI PLDLKEYWAR HGTNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-120BBR-BPC family protein