PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g768490.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HB-PHD

Protein Properties

Length: 808aa MW: 91186 Da PI: 9.9306

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g768490.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.3	4.1e-11	585	628	10	53
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e L ++F +n ps++ +e L+k+lgL+ ++V+ WF+N R+ Pd.00g768490.m01 585 KAVEKLRQVFSENELPSRDVKENLSKELGLDPEKVSKWFKNARY 628 67899*************************************97 PP
2	PHD	40	8.7e-14	343	398	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+++fH+kCl+++l++e++p+g w+C+ C++k Pd.00g768490.m01 343 FCAKCKLNEAfpDNDIILCDgTCNSAFHQKCLDPPLDTENIPRGdqGWFCKFCECK 398 699999955455******56*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence
MALRRFYSEI KGLKVKELPS YVKPMLSVDC AKKTVQRGLD NYHAKSVATS STSSTPRSMA 60 IDLNWLMSAL GVGSPIKFTW PLGILPITFL QSPAVHRSLF FFSIDTLVSR MRGLGKKSSL 120 KESGKPRYSN SVAKLISSPK FRKGGKVSHV KKIKPRSKTI IASCLSKKRG ADSTRKGSRN 180 NDTDKKLMSR KGVHKVHDTN SSKKLSSVKL QDEKFSFKDS DKKGENADGE VKLRIKRSRK 240 KKLQKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYSGE GWKGQSREKI KPEKELQRAK 300 KQILKCKLGI RDAIHQLYSL SSVGSMADSV IAADGSVYHE HIFCAKCKLN EAFPDNDIIL 360 CDGTCNSAFH QKCLDPPLDT ENIPRGDQGW FCKFCECKME ILEVVNAHLG TCFSNDCGWQ 420 DVFKEEAAFP DGENSLLNPD EEWPSDDSED DDYNPERNEN SCSFSMGGTE DNASDDELST 480 DVSVGSDEST DGEVVSGRRQ RRRVDYKKLY DEMFGKDGPL HEQISDDEDW GPVKRKRREK 540 ESDAASTLMT LYESERIPDV TPTEVKSKHP PDTQVRRACF RIPRKAVEKL RQVFSENELP 600 SRDVKENLSK ELGLDPEKVS KWFKNARYLA LKTRKEESAT NLHTVTPGIS KESTLENVTE 660 KAADLMASDS DDFLAETVVH SPRNVKKSFR RKHPKSLSSP LRKNQQKGSS CGSPAKRNKD 720 GMELSDNVSL KKLLKERTKE KKANLIAGGG CRVAELEMER LCKAKGRLEN MRQKLLKFQN 780 AKAKKSNKSL LHEQSVIYVP IAELKDKV

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence

MALRRFYSEI KGLKVKELPS YVKPMLSVDC AKKTVQRGLD NYHAKSVATS STSSTPRSMA  60
IDLNWLMSAL GVGSPIKFTW PLGILPITFL QSPAVHRSLF FFSIDTLVSR MRGLGKKSSL  120
KESGKPRYSN SVAKLISSPK FRKGGKVSHV KKIKPRSKTI IASCLSKKRG ADSTRKGSRN  180
NDTDKKLMSR KGVHKVHDTN SSKKLSSVKL QDEKFSFKDS DKKGENADGE VKLRIKRSRK  240
KKLQKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYSGE GWKGQSREKI KPEKELQRAK  300
KQILKCKLGI RDAIHQLYSL SSVGSMADSV IAADGSVYHE HIFCAKCKLN EAFPDNDIIL  360
CDGTCNSAFH QKCLDPPLDT ENIPRGDQGW FCKFCECKME ILEVVNAHLG TCFSNDCGWQ  420
DVFKEEAAFP DGENSLLNPD EEWPSDDSED DDYNPERNEN SCSFSMGGTE DNASDDELST  480
DVSVGSDEST DGEVVSGRRQ RRRVDYKKLY DEMFGKDGPL HEQISDDEDW GPVKRKRREK  540
ESDAASTLMT LYESERIPDV TPTEVKSKHP PDTQVRRACF RIPRKAVEKL RQVFSENELP  600
SRDVKENLSK ELGLDPEKVS KWFKNARYLA LKTRKEESAT NLHTVTPGIS KESTLENVTE  660
KAADLMASDS DDFLAETVVH SPRNVKKSFR RKHPKSLSSP LRKNQQKGSS CGSPAKRNKD  720
GMELSDNVSL KKLLKERTKE KKANLIAGGG CRVAELEMER LCKAKGRLEN MRQKLLKFQN  780
AKAKKSNKSL LHEQSVIYVP IAELKDKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	268	RKKKLQKDKVELDETSRLQRRTRYLLIKIK
2	498	503	RRQRRR
3	535	540	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-155	HB-PHD family protein