PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g759890.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 1310aa MW: 147165 Da PI: 8.6738

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g759890.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78.7	9.7e-25	987	1061	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g759890.m02 987 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 1061 689*****************************************************************9999875 PP
2	DUF260	124	7.6e-39	1115	1216	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l Pd.00g759890.m02 1115 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACL 1205 7***********************99*********************************************************** PP DUF260 91 kaelallkeel 101 +a+l ++k++l Pd.00g759890.m02 1206 QAQLMQVKAQL 1216 **9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1310 aa Download sequence
MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK 60 KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT 120 CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA 180 VRALVKKVPS NARGGKKTEE QEDKEFLQQS TPKTSTKRRK DSGGDQQSKV ARSEGDVSTS 240 WDVSSRDATD LESKLEAQTK ELWALKDDLK KHVTTAELRE MLEANVQDST GSELDLRERC 300 ADGMMFGALS RCPICSGFLR YSGGMYRCHG YISEWSKCSY STEEPERLKW KWKIPEDTDN 360 QYLNKWFKSQ KVEKPVRILP PSTPNKPSLS QAFNGQSQSS NSANLADLKV AFRGLPQESM 420 EEWSRKIEGV AGLVHSKIKK DTNCLVVSGA LDDKDAEMRK ARRMKLPIVR EDYLVDCFKK 480 QKKLPFDLYK VEVVGEASSM VTVKVKGRSA VHESSGLQDT CHILEDGKSI YNTTLSMSDL 540 STGVNSYYIL QIIQDDKSSD CYVFRKWGRV GNDKIGGNKL EEMSKSDAIC EFKRLFLEKT 600 GNSWEAWEQK QHFQKQPGRF FPLDIDYGVN KQVSKKNQNN AASKLAPPLA ELMKMLFNVE 660 TYRAAMMEFE INMSEMPLGK LSKSNIQKGF EALTEIQNLL NSNGHAPSMK ESLIVDASNR 720 FFTVIPSIHP RVIRDEDDFK SKVKMLEALQ DIEIASRLVG FDADTDDSLD EKYRKLRCDI 780 DPIPHDSEDF RLIKKYLLTT HAPTHTDWSL ELEEVFALER EGEFDKFAPY RKKLNNRMLL 840 WHGSRFTNFV GILSQGLRIA PPEAPSTDKK NPVGLMLLSE VALGEVHELK KATYMDKPPK 900 GKHSTKGLGK KIPQESEYVK WKDDVIVPCG KPVPSNIKAS ELMYNEYIVY DKAQVKMQFL 960 LKVRFHHKRK IPAGMPQGDK LQQFPGPARF AAIHKVFGAS NVSKLLLHVP VHDRCEAVVT 1020 IAYEAQARIR DPVYGCVAHI FSLQQQVACL QAQLMQVKAQ LAHQSLVDSR NIESTQWPGN 1080 VNGVTNFPNY PISYSLPNPK MASGAGSNGS GTGSPCGACK FLRRKCASDC IFAPYFCSEQ 1140 GPARFAAIHK VFGASNVSKL LLHVPVHDRC EAVVTIAYEA QARIRDPVYG CVAHIFSLQQ 1200 QVACLQAQLM QVKAQLAHQS LVDSRNIEST QWPGNVNGVT NFPNYPSYMN PISPQSSLES 1260 IDHNCSDIAM NMQEIQSSRD DFSYQACSKR RPYNGDLGEL QALALRMMRN

Sequence ? help Back to Top

Protein Sequence Length: 1310 aa Download sequence

MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK  60
KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT  120
CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA  180
VRALVKKVPS NARGGKKTEE QEDKEFLQQS TPKTSTKRRK DSGGDQQSKV ARSEGDVSTS  240
WDVSSRDATD LESKLEAQTK ELWALKDDLK KHVTTAELRE MLEANVQDST GSELDLRERC  300
ADGMMFGALS RCPICSGFLR YSGGMYRCHG YISEWSKCSY STEEPERLKW KWKIPEDTDN  360
QYLNKWFKSQ KVEKPVRILP PSTPNKPSLS QAFNGQSQSS NSANLADLKV AFRGLPQESM  420
EEWSRKIEGV AGLVHSKIKK DTNCLVVSGA LDDKDAEMRK ARRMKLPIVR EDYLVDCFKK  480
QKKLPFDLYK VEVVGEASSM VTVKVKGRSA VHESSGLQDT CHILEDGKSI YNTTLSMSDL  540
STGVNSYYIL QIIQDDKSSD CYVFRKWGRV GNDKIGGNKL EEMSKSDAIC EFKRLFLEKT  600
GNSWEAWEQK QHFQKQPGRF FPLDIDYGVN KQVSKKNQNN AASKLAPPLA ELMKMLFNVE  660
TYRAAMMEFE INMSEMPLGK LSKSNIQKGF EALTEIQNLL NSNGHAPSMK ESLIVDASNR  720
FFTVIPSIHP RVIRDEDDFK SKVKMLEALQ DIEIASRLVG FDADTDDSLD EKYRKLRCDI  780
DPIPHDSEDF RLIKKYLLTT HAPTHTDWSL ELEEVFALER EGEFDKFAPY RKKLNNRMLL  840
WHGSRFTNFV GILSQGLRIA PPEAPSTDKK NPVGLMLLSE VALGEVHELK KATYMDKPPK  900
GKHSTKGLGK KIPQESEYVK WKDDVIVPCG KPVPSNIKAS ELMYNEYIVY DKAQVKMQFL  960
LKVRFHHKRK IPAGMPQGDK LQQFPGPARF AAIHKVFGAS NVSKLLLHVP VHDRCEAVVT  1020
IAYEAQARIR DPVYGCVAHI FSLQQQVACL QAQLMQVKAQ LAHQSLVDSR NIESTQWPGN  1080
VNGVTNFPNY PISYSLPNPK MASGAGSNGS GTGSPCGACK FLRRKCASDC IFAPYFCSEQ  1140
GPARFAAIHK VFGASNVSKL LLHVPVHDRC EAVVTIAYEA QARIRDPVYG CVAHIFSLQQ  1200
QVACLQAQLM QVKAQLAHQS LVDSRNIEST QWPGNVNGVT NFPNYPSYMN PISPQSSLES  1260
IDHNCSDIAM NMQEIQSSRD DFSYQACSKR RPYNGDLGEL QALALRMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	9e-58	LBD family protein