PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g703280.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 773aa MW: 87651.9 Da PI: 8.9002

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g703280.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	41	2.6e-13	723	755	1	31
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyr 31 C+ nC++t++p+WR gp g+k+LCn CG++ r Pd.00g703280.m01 723 CTnyNCRVTESPMWRTGPLGPKSLCNRCGIRSR 755 55559*************************977 PP

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence
MAFLETSIPN HYNNLVCVKR GLGVVIRDSM GDLMMAAYKV TNSKSRKSQD GNKSQKSSKP 60 PGQAKEHKDQ LERLSEKDPE FYDFLKEHDQ ELLQFNDEDI EEDSDTNLKE DETPVDDEIQ 120 VDEETGRHDV VQKKKKPSKK VITSEMVDSW CNSIREDGKL SAIHSLMKAF RTACHYGDDK 180 EDESMLDFGV MSSSVFNKVM LFVLKEMDGI IRKLLELPAF GGKKETILDA MNTKRWKNYN 240 HLVKSYLGNA LHVLRQMTDT EMISFTLRRL QYSSIFLAAF PVLLRKYIKT AVDLWGLGGG 300 SLPLVSLLFL RDLCVRLGSD CLDECFKGMY KAYVLNCQFI TAAKLQHVQF RANCVIELYG 360 VDLPTAYQHA FVFIRQLAMI LREALNAKTK EAFRKVYEWN FMNCLELWTG AISSYGSEAD 420 FRPVVYPLAQ IIYGVARLVP TARYFPLRLR CVRMLNRIAA STGTFTPVSM LLLDMLEMKE 480 LNRPATGGVG KALDLRTILK VSKPTLKTRA FQEACVLSVV DELAEHLAQW SYSIAFPELS 540 FIPAVRLRSF CKSTKVERFR KAMRELIRQI EANCQFTNER RMSISFLPND PAAASFLERK 600 HMDPKGVQNG FEMTNFDQHE ANLGGTDCLV DLTLRLGIPS SDKNNDQQSH TANGSSTSQA 660 VDRSSLNNLH VNGYKQYEFP APPELKNYCI INISNRRGKT GGSRKRKTTG RRPAKVGDID 720 KTCTNYNCRV TESPMWRTGP LGPKSLCNRC GIRSRVDAYS QALNCLSFNK LGL

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence

MAFLETSIPN HYNNLVCVKR GLGVVIRDSM GDLMMAAYKV TNSKSRKSQD GNKSQKSSKP  60
PGQAKEHKDQ LERLSEKDPE FYDFLKEHDQ ELLQFNDEDI EEDSDTNLKE DETPVDDEIQ  120
VDEETGRHDV VQKKKKPSKK VITSEMVDSW CNSIREDGKL SAIHSLMKAF RTACHYGDDK  180
EDESMLDFGV MSSSVFNKVM LFVLKEMDGI IRKLLELPAF GGKKETILDA MNTKRWKNYN  240
HLVKSYLGNA LHVLRQMTDT EMISFTLRRL QYSSIFLAAF PVLLRKYIKT AVDLWGLGGG  300
SLPLVSLLFL RDLCVRLGSD CLDECFKGMY KAYVLNCQFI TAAKLQHVQF RANCVIELYG  360
VDLPTAYQHA FVFIRQLAMI LREALNAKTK EAFRKVYEWN FMNCLELWTG AISSYGSEAD  420
FRPVVYPLAQ IIYGVARLVP TARYFPLRLR CVRMLNRIAA STGTFTPVSM LLLDMLEMKE  480
LNRPATGGVG KALDLRTILK VSKPTLKTRA FQEACVLSVV DELAEHLAQW SYSIAFPELS  540
FIPAVRLRSF CKSTKVERFR KAMRELIRQI EANCQFTNER RMSISFLPND PAAASFLERK  600
HMDPKGVQNG FEMTNFDQHE ANLGGTDCLV DLTLRLGIPS SDKNNDQQSH TANGSSTSQA  660
VDRSSLNNLH VNGYKQYEFP APPELKNYCI INISNRRGKT GGSRKRKTTG RRPAKVGDID  720
KTCTNYNCRV TESPMWRTGP LGPKSLCNRC GIRSRVDAYS QALNCLSFNK LGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	696	713	RRGKTGGSRKRKTTGRRP
2	703	708	SRKRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	9e-12	GATA family protein