PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g687860.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 545aa MW: 61224.3 Da PI: 9.9138

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g687860.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.2	1.1e-28	66	150	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+k+ e g+ rs+k+Ckek+en+ k+++++keg++++ ++ +t+++fd+lea Pd.00g687860.m01 66 RWPRQETLALLKIRSQMDAAFRDSSLKAPLWEDVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--QEGKTYRFFDELEA 150 8******************************************************************96..55557****985 PP
2	trihelix	100.8	1.1e-31	413	497	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r+ ++ r++++ k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+qle Pd.00g687860.m01 413 RWPRVEVEALINLRTCLDVRYQEAGPKGSLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFNQLE 497 8******************************************************************97.99*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MPAVDVPAPD SSSTMLAAGS SSGQGVAGVV REGSHETTAV LSSSVQEDKD GRVDDLGDRN 60 LFGGNRWPRQ ETLALLKIRS QMDAAFRDSS LKAPLWEDVS RKLGELGYYR SAKKCKEKFE 120 NVYKYHRRTK EGRSGKQEGK TYRFFDELEA FDQQNNHPSV PPKPQVLLWP NNSHHHPNNP 180 SVVSHVITSV VPLSSTPNMM ATTNGSLNGS HISPPPINSL PPQVTKPVNL SHQNLNGFKP 240 SLATSNLFSS STSSTASDEE FQVQQSGKKK RKWKYFFGRL TKEVLEKQEK LQEKFLEAIA 300 KCEHQRTVRE EAWRMQEMAR LDKEHQILAQ ERSSAAAKDA AVIEFLQKVS GQQNVTNNIQ 360 AIEVNRTIPS RPQPLPVLMP PPPPAPVAVI TTSFEAPRLD KGDNSTIPPG STRWPRVEVE 420 ALINLRTCLD VRYQEAGPKG SLWEEISAGM RRLGYNRSAK RCKEKWENIN KYFKKVKESS 480 KTRPEDSKTC PYFNQLEDLY RKKNMNNSSH VGYVEKPLPQ AILQPLIKKL TIHEFPCSGY 540 VVSLN

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MPAVDVPAPD SSSTMLAAGS SSGQGVAGVV REGSHETTAV LSSSVQEDKD GRVDDLGDRN  60
LFGGNRWPRQ ETLALLKIRS QMDAAFRDSS LKAPLWEDVS RKLGELGYYR SAKKCKEKFE  120
NVYKYHRRTK EGRSGKQEGK TYRFFDELEA FDQQNNHPSV PPKPQVLLWP NNSHHHPNNP  180
SVVSHVITSV VPLSSTPNMM ATTNGSLNGS HISPPPINSL PPQVTKPVNL SHQNLNGFKP  240
SLATSNLFSS STSSTASDEE FQVQQSGKKK RKWKYFFGRL TKEVLEKQEK LQEKFLEAIA  300
KCEHQRTVRE EAWRMQEMAR LDKEHQILAQ ERSSAAAKDA AVIEFLQKVS GQQNVTNNIQ  360
AIEVNRTIPS RPQPLPVLMP PPPPAPVAVI TTSFEAPRLD KGDNSTIPPG STRWPRVEVE  420
ALINLRTCLD VRYQEAGPKG SLWEEISAGM RRLGYNRSAK RCKEKWENIN KYFKKVKESS  480
KTRPEDSKTC PYFNQLEDLY RKKNMNNSSH VGYVEKPLPQ AILQPLIKKL TIHEFPCSGY  540
VVSLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-122	Trihelix family protein