PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g667860.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 333aa MW: 37350.8 Da PI: 7.12 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 43.4 | 5.7e-14 | 250 | 275 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++ G+C+yG+ C+FaHg Pd.00g667860.m01 250 FKTELCNKWQEAGECPYGEHCQFAHG 275 79***********************8 PP | |||||||
2 | zf-CCCH | 19.1 | 2.4e-06 | 288 | 312 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Pd.00g667860.m01 288 YKTEVCRMVLA-GvACPYGHRCHFRH 312 9**********.66**********88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence |
MHNDTASSTS NGGLAISSPF KSQPRSDDAV FSSLYSAIFD RKPSLARYNE SEPDASSNHP 60 HRQLYHSLLV QDHQEMVNRH SRTLKQLHEA SEEADALRRE NIHLRALNLE LNKHLSLLIH 120 ASVQKQFVSP CSVETTPFGI VNRLHTMSID DKRAEEDESA ESPTSVIESE GADAENIDVE 180 RFTLPKSISV RSDGYVKVAQ PGTSTAAGTR AATRPRTANT FNASQKVYVP TGGMKEQEPL 240 ELEVYNQGMF KTELCNKWQE AGECPYGEHC QFAHGIEELR PVIRHPRYKT EVCRMVLAGV 300 ACPYGHRCHF RHALTENEKF MGPNKPRAMK LAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 4e-73 | C3H family protein |