PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g649900.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 1038aa MW: 112541 Da PI: 6.6544

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g649900.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	27	6.4e-09	178	199	1	22
GATA 1 CsnCgttkTplWRrgpdgnktL 22 Cs C+t +TplWR+gp g+ktL Pd.00g649900.m01 178 CSDCHTNSTPLWRSGPLGPKTL 199 ********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence
MMTPVYLNPA SSPFSMVEQA EDQRLKLFIS PPYDEAASCT SFPFPTFFDS LQDQTPGTTF 60 TSLAHHQSQL YHHKDKNIWD CGTSYDQASS SSSLVQAHVV DAISNKDRRL SRCVKRMSSK 120 MRLMQKMTSN NPDLPPGTTD HIPAEISEHK FQIHAQPREI SETSFSSNSN NTAAVRVCSD 180 CHTNSTPLWR SGPLGPKTLI TDLTGLPMSN ASLLDEGTAA AEAMAMCNNI QKGKKKTFVI 240 ANNCHPQTID ICKTRADGFD LKVVTADLKD IDYKSGDVCG VLVQYPGTEG EVLDYGEFIK 300 NAHANGVKVV MATDLLALTL LKPPGEFGAD IVVGSAQRFG VPMGYGGPHA AFLATSQEYK 360 RMMPGRIIGL SVDSSGKPAL RMAMQTREQH IRRDKATSNI CTAQALLANM AAMYAVYHGP 420 EGLKTISQRV HGLAGAFAVG LKKLGTVEVQ GLPFFDTVKV KTSDAHAIAD AAIKHGINLR 480 VVDTNTITAS FDETTTLEDV DKLFKVFALG KPVPFTAASL APEVQPAIPS GLTRESPYLT 540 HPIFNSYHTE HELLRYIHRL QSKDLSLCHS MIPLGSCTMK LNATTEMMPV TWPSFSDIHP 600 FAPVEQAAGY QEMFEDLGDL LCTLTGFDSF SLQPNAGAAG EYAGLMVIRA YHFARGDHHR 660 NVCIIPVSAH GTNPASAAMC GMKIVTIGTD AKGNINIEEL RKAAETNKDN LSALMVTYPS 720 THGVYEEGID EICKIIHDNG GQVYMDGANM NAQVGLTSPG WIGADVCHLN LHKTFCIPHG 780 GGGPGMGPIG VKKHLAPFLP SHPVVPTGGF PAPDKSQPLG TISAAPWGSA LILPISYTYI 840 AMMGSKGLTD ASKIAILNAN YMAKRLEDYY PILFRGVNGT VAHEFIVDLR GFKHTAGIEP 900 EDVAKRLMDY GFHGPTMSWP VPGTLMIEPT ESESKAELDR FCDALISIRE EIAEIEKGKA 960 DLHNNVLKGA PHPPSLLMGD AWTKPYSREY AAFPASWLRS AKFWPTTGRV DNVYGDRNLI 1020 CTLQPASQAV EEQAAATA

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence

MMTPVYLNPA SSPFSMVEQA EDQRLKLFIS PPYDEAASCT SFPFPTFFDS LQDQTPGTTF  60
TSLAHHQSQL YHHKDKNIWD CGTSYDQASS SSSLVQAHVV DAISNKDRRL SRCVKRMSSK  120
MRLMQKMTSN NPDLPPGTTD HIPAEISEHK FQIHAQPREI SETSFSSNSN NTAAVRVCSD  180
CHTNSTPLWR SGPLGPKTLI TDLTGLPMSN ASLLDEGTAA AEAMAMCNNI QKGKKKTFVI  240
ANNCHPQTID ICKTRADGFD LKVVTADLKD IDYKSGDVCG VLVQYPGTEG EVLDYGEFIK  300
NAHANGVKVV MATDLLALTL LKPPGEFGAD IVVGSAQRFG VPMGYGGPHA AFLATSQEYK  360
RMMPGRIIGL SVDSSGKPAL RMAMQTREQH IRRDKATSNI CTAQALLANM AAMYAVYHGP  420
EGLKTISQRV HGLAGAFAVG LKKLGTVEVQ GLPFFDTVKV KTSDAHAIAD AAIKHGINLR  480
VVDTNTITAS FDETTTLEDV DKLFKVFALG KPVPFTAASL APEVQPAIPS GLTRESPYLT  540
HPIFNSYHTE HELLRYIHRL QSKDLSLCHS MIPLGSCTMK LNATTEMMPV TWPSFSDIHP  600
FAPVEQAAGY QEMFEDLGDL LCTLTGFDSF SLQPNAGAAG EYAGLMVIRA YHFARGDHHR  660
NVCIIPVSAH GTNPASAAMC GMKIVTIGTD AKGNINIEEL RKAAETNKDN LSALMVTYPS  720
THGVYEEGID EICKIIHDNG GQVYMDGANM NAQVGLTSPG WIGADVCHLN LHKTFCIPHG  780
GGGPGMGPIG VKKHLAPFLP SHPVVPTGGF PAPDKSQPLG TISAAPWGSA LILPISYTYI  840
AMMGSKGLTD ASKIAILNAN YMAKRLEDYY PILFRGVNGT VAHEFIVDLR GFKHTAGIEP  900
EDVAKRLMDY GFHGPTMSWP VPGTLMIEPT ESESKAELDR FCDALISIRE EIAEIEKGKA  960
DLHNNVLKGA PHPPSLLMGD AWTKPYSREY AAFPASWLRS AKFWPTTGRV DNVYGDRNLI  1020
CTLQPASQAV EEQAAATA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	3e-09	GATA family protein