PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g646680.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 306aa MW: 32119.2 Da PI: 6.7556 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 88.8 | 1.2e-27 | 1 | 108 | 24 | 112 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........................... 88 ++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + Pd.00g646680.m01 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyyspnfsvhqnqrrslfqgig 93 9**********************************************9998777777777765665444445555555555555333333333 PP TCP 89 ..kaaksaakskksqksaasalnlak 112 + ++s+++ ln++ Pd.00g646680.m01 94 lsS-----------SDSSSTLLNFQT 108 331...........333333333333 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG 60 SSMSVPSQLR SSYYSPNFSV HQNQRRSLFQ GIGLSSSDSS STLLNFQTNS MHASMLQAKQ 120 ELRDTVSLDL SETASGEGSM GGRKRRPPEQ DLNQMGGGGG GGGGGYLLQS STGAVPASHH 180 HSQIPANFWM VANSNNQVMS GDPIWTFPAS VNNSGLYRGT MSGGLHFMNF PAPMTLLPSQ 240 QQLGGSGGGG GGNDGDNMSD GQLNMLAGLN PYRHMSSTGV SESQQASGSH SHHGGDDRHD 300 STSHHS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 9e-38 | TCP family protein |