PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g643890.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 309aa    MW: 34497.3 Da    PI: 4.0167
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g643890.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC37.35.9e-12951751897
             NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                       + e+P +r+k+i+k d  ++++ +ea  l+s + +lf+  l+ rs   a e+kr+ +k   +  av+r   + dfl+d+ p
  Pd.00g643890.m01  95 RPEFPNTRVKRIMKLDSCINKVNSEALLLVSCSAQLFLEFLAERSAEVAAEKKRKIVKLEHMRVAVKRHRpTSDFLLDELP 175
                       5689**************************************************************9975389*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MAEEQNAARE EDNIAGEENA EQEEENAEQE EENAEQAEEN AEQAEENAEQ EEDDAEQEED  60
NPENAVENAA VKEKAKVAQE EEDAEPIRSE NSQIRPEFPN TRVKRIMKLD SCINKVNSEA  120
LLLVSCSAQL FLEFLAERSA EVAAEKKRKI VKLEHMRVAV KRHRPTSDFL LDELPVPSQP  180
SDHQPTDRSS SRTVSHAPAP ARRDRSRSRA VSDKPAPAGT RRIDHFFLTK EIPIQTEQSL  240
IETEEAPIEI KEASIEIDEA PIETDEGPIE TDEASIETDE ASIEIDKAPI VTDEGPIETG  300
EGPIETNES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.18e-43NF-YC family protein