PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g620010.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 423aa MW: 44687.4 Da PI: 7.5778

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g620010.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.2e-39	57	153	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Pd.00g620010.m01 57 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPshylr 149 789******************************************************************999766666666664444444444 PP TCP 89 ...k 89 + Pd.00g620010.m01 150 pnsS 153 4320 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEAENGIRCR PNFPLQFLDK NQDDDIQEAP GDPGSNQNRP GSSLTQEQQP NNGKKPPPKR 60 TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVIAATGT 120 GTIPANFTSL NISLRSSGSS MSAPSHYLRP NSSNYFMNFN PNNLGAAAAS QLIMDENSQR 180 GRILFPGVGL LSSESAPSSS MLLNFNNAML EAKRELRDQG GSLGEVSEGG EASAMGRKRI 240 RPEQDLLSSS SSSSSSSQSS HHQMGISNSY MLQSASTGSI PASQSTIPAT FWMVANNPSS 300 GSGGGGHHVH EPPINPMWTI PSINNGINSN MYRGASVSSG GGHGLHFMNF APPPMAAILP 360 SHMGSTPHGG GGSIADSHLG VMAALNAYRP ILGGVMAEPP GGNNGQHSHH GADEGHDRDS 420 NAR

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEAENGIRCR PNFPLQFLDK NQDDDIQEAP GDPGSNQNRP GSSLTQEQQP NNGKKPPPKR  60
TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVIAATGT  120
GTIPANFTSL NISLRSSGSS MSAPSHYLRP NSSNYFMNFN PNNLGAAAAS QLIMDENSQR  180
GRILFPGVGL LSSESAPSSS MLLNFNNAML EAKRELRDQG GSLGEVSEGG EASAMGRKRI  240
RPEQDLLSSS SSSSSSSQSS HHQMGISNSY MLQSASTGSI PASQSTIPAT FWMVANNPSS  300
GSGGGGHHVH EPPINPMWTI PSINNGINSN MYRGASVSSG GGHGLHFMNF APPPMAAILP  360
SHMGSTPHGG GGSIADSHLG VMAALNAYRP ILGGVMAEPP GGNNGQHSHH GADEGHDRDS  420
NAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	4e-44	TCP family protein