PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g615070.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 974aa    MW: 107742 Da    PI: 6.5781
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g615070.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.4e-22126227199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  Pd.00g615070.m01 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMAKDLHDSAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--R 214
                       99*****************************954.5444.48************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Pd.00g615070.m01 215 DEKSQLLLGIRRA 227
                       5677789999997 PP
2Auxin_resp122.62.8e-40252334183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F++++nPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sd+d+vrW+nS+Wr+L+
  Pd.00g615070.m01 252 AAHAAANNSPFTIFFNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDTVRWKNSQWRNLQ 334
                       79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    
MKAPTNGFLA TSGEGEQKRI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQSR  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMAKD LHDSAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVMS  240
SDSMHIGILA AAAHAAANNS PFTIFFNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKSAPNSI FPGLSLMQWM  420
NMQQNNQFSA AQSGYFPSMV PPTGLQNNLS TDDPSKLLSF QAPVLSAPGV QLNKSAPQNQ  480
IPGQNSHQPV MFSQLQQQQL QTGNTQSQQT VHSSSKNSFQ FTTGSQDSQL QQQQLEPQPS  540
LLQRQQQSAQ LQQSSLQLLH QSVSQKQQLA HQQNQQLQQL PLSQHHQQPL SGNSFSADKL  600
LNNNFSAPSL MQSQHISSVQ PQSQHKPLTA IRSHSGLTEG DGPSCSTSPS TNNCQMSPSN  660
FLNRNQQGTA MLLGDSVAEP ASNLVQELQS KSDIRIKHEF PSSKGPDQIK YKGTITDQLE  720
ASSSGTSYCL DASTIQQNYA LPTFCLDSDV QSHPRNSLPF SANIEGLAPD TLLSRGYDSQ  780
KDLQNLLSNY GGTPRDIETE LSTAAISSQS FGAANLPFKP GCSSDVAINE AGVLSNGLWA  840
NQAQRMRTYT KVQKRGSVGR CIDVTRYKGY DELRHDLARM FGIEGQLEDP HRTDWKLVYV  900
DHENDILLVG DDPWEEFVGC VQSIKILSSV EVQQMSLDGN LGNVPAPNQA CSGSDSGNAW  960
RAPYDDNSAA SFNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein