PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g611250.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 477aa MW: 52923.4 Da PI: 5.9032 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 435.3 | 4.5e-133 | 91 | 451 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv+lL++cAe v+ gdl+la +l++++++l + ++ + ++a yf AL++r+++ +ps +s e+ +++f+e++P+l Pd.00g611250.m01 91 LVHLLVTCAESVQRGDLALAGSLIENMQTLltRVNTSCGIGKVAGYFIDALSRRIFS---------HPSVAS---AHENELLYHYFYEACPYL 171 68***************************954444446899***************9.........333333...456667889********* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 kf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+ Pd.00g611250.m01 172 KFAHFTANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAAS 264 ********************************************************************************************* PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 rled+++++L+v+p+Ea+aVn+++qlhrll ++ + +s+++ +L +++l+Pk+v+vveqeadhn++ Fl+rf+eal+yys++fdslea Pd.00g611250.m01 265 RLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSDPNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKTGFLDRFTEALYYYSTMFDSLEAC--- 354 ***************************************************************************************999... PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 + + ++ + +++++rei+nvv+cega+r+erhe l+kWr+rl++aGF+p++l+++a kqa++ll ++ +gyrvee++g+l+lgW++rpL+++ Pd.00g611250.m01 355 AMQPEKALAEMYIQREICNVVCCEGAARVERHEPLGKWRARLGQAGFRPLHLGSNAFKQASMLLTLFSAEGYRVEENDGCLTLGWHSRPLIAA 447 467777888899********************************************************************************* PP GRAS 371 SaWr 374 SaW+ Pd.00g611250.m01 448 SAWQ 451 ***6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 477 aa Download sequence |
MVNSPNNLSQ LASDAVLYNP SDIATWVDSL LSEFNHQPLI SLPSDLDFPD VIINPTDLPN 60 DTWTEPLPPP QQHHHQLTVV TAMEEDSGIR LVHLLVTCAE SVQRGDLALA GSLIENMQTL 120 LTRVNTSCGI GKVAGYFIDA LSRRIFSHPS VASAHENELL YHYFYEACPY LKFAHFTANQ 180 AILEAFQGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP SPDGRDSLRE 240 IGLRLAELAR SVNVRFAFRG VAASRLEDVK PWMLQVSPKE AVAVNSIMQL HRLLGSDPNR 300 NSPIEMMLGW IRNLNPKIVT VVEQEADHNK TGFLDRFTEA LYYYSTMFDS LEACAMQPEK 360 ALAEMYIQRE ICNVVCCEGA ARVERHEPLG KWRARLGQAG FRPLHLGSNA FKQASMLLTL 420 FSAEGYRVEE NDGCLTLGWH SRPLIAASAW QVMPTAEATT ANQPVGVINQ NNNANHV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-136 | GRAS family protein |