PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g602130.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 21035.1 Da PI: 9.4592 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.5e-11 | 15 | 67 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksLq 55 + +Er+RR ++++ ++L +l+P+ sk+++ K ls + L +A YIk+L+ Pd.00g602130.m01 15 KTVERNRRIHMKDLCFKLASLIPPqHSKPSNSKdtLSQQDQLDLASSYIKQLR 67 679*********************77755555556****************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence |
MKKSSGESSS KLDRKTVERN RRIHMKDLCF KLASLIPPQH SKPSNSKDTL SQQDQLDLAS 60 SYIKQLRERI ENLKERKEKA MRSQLGIDAN STIDADNAMM VRSRLPVIEL RDSGSIIEVM 120 LISGLNKNFM LYEVIGVLEE EGAEVISASF STVGDKVFHS LHAQVKISRV GVETSTVWQR 180 LQDLIY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-33 | bHLH family protein |