PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g590390.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 537aa MW: 59610.9 Da PI: 6.7541 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.4 | 3.6e-25 | 104 | 205 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+ltpsd+++ g +++p+ +a+++ +++ + tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +gD++vF+ + Pd.00g590390.m01 104 FAKILTPSDANNGGGFSVPRFCADSIfpalnyqAEPPVQ--TLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSIVFM--R 192 89*********************999****985444444..9************************************************..6 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +s++e++v+v+r+ Pd.00g590390.m01 193 NSRGEMFVGVRRA 205 69999*****996 PP | |||||||
2 | Auxin_resp | 54.1 | 6.5e-19 | 244 | 300 | 28 | 83 |
Auxin_resp 28 vekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 +e vekal+v +s+GmR+km++etedss+ ++ +Gt ++vs d+ W++S+Wr+L+ Pd.00g590390.m01 244 AEVVEKALNVFWSAGMRVKMSVETEDSSRMTWfQGTLSSVSIPDNGPWQRSPWRMLQ 300 67899**************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence |
MPPTPHPPSH HHPHSHSYSP HRPIDPKIWR ACAGNSVQIP ILHSRPLILC RISAVHFLAD 60 PTTDEVFAKL LLLPIPNYEP TNRHEPPNDD VFDDADETDK VVSFAKILTP SDANNGGGFS 120 VPRFCADSIF PALNYQAEPP VQTLSVTDLH GVVWDFRHIY RGTPRRHLLT TGWSKFVNHK 180 MLVAGDSIVF MRNSRGEMFV GVRRAVRSTV SSDCASRWSS HISGGATTTM RLKTEDQEGS 240 GRKAEVVEKA LNVFWSAGMR VKMSVETEDS SRMTWFQGTL SSVSIPDNGP WQRSPWRMLQ 300 VTWDEPEVLQ NAKRVSPWQV DYVASTPSIH TAFPPAKRFR APMSPGLLTN AEEEFFFPVP 360 GAPNSTMGQL NASLLNYNTF PAGMQGARQD LYCVSNLSQL LSENTPQMCT YNSFGNNVVP 420 KLKRVSTELN IGSSQSDELS PDSQSSVHSF GTELDGNRYC NSTKVGRSSF QLFGKIIYMN 480 QPVEGGFDDV GCTEDNGNKG YNATEGVNNQ LDLSYSKLLE RLDVQYQRAS AVEACSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-155 | ARF family protein |