PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g562230.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 165aa MW: 18377.1 Da PI: 9.5634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 109 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ +lG++ W++Ia++++ Rt++++k++w+++l Pd.00g562230.m01 109 RGNFTDHEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 154 89********************.*********.************996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence |
MCSSRKKKGY FELLGLAQAE WGSPVCPLLQ PSQHEGPADA PAQPTPHAKP IVACFSSSVQ 60 PSIFSWPALS KLEPTSRQDL ALLLLRSPAS PLAHSLLLQH KARELGIKRG NFTDHEEKMI 120 IHLQDLLGNR WAAIASYLPQ RTDNDIKNYW NTHLKKEAQK APDRA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28910.1 | 9e-31 | MYB family protein |