PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g549500.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 305aa    MW: 33055.3 Da    PI: 6.9489
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g549500.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014112134123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C++ Fs++  L  H++ H
  Pd.00g549500.m01 112 FTCNFCKREFSTSQALGGHQNAH 134
                       89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MLRMGAELRL ERLSPTSEAS NISATSDDLP PTKKDGPENL NQKLKEKILC NNESAHGLGS  60
SSRLELNLFN PSNLGSSNPG SSNPVSEYSQ PNETTDENPR GSDDKRSQPR VFTCNFCKRE  120
FSTSQALGGH QNAHKQERAL AKRQQGGLEN MGGVLGHSPF SYYNPYSSLS SPSLYGSFNR  180
SLGVRMDSMI HKPSYPWSST PGFGRFGPSS GAWSSRAGSL LNFQSTMDRL NLEGLHANAP  240
SGISGLPGTS SASRFDKEIG VVHNFGGSNS NSEINRPILG DLLRREPPTS DTDTADLLYC  300
HENVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.18e-16C2H2 family protein