PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g548520.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 303aa MW: 34415.6 Da PI: 10.3801

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g548520.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.3	6.2e-16	30	113	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++ +++spk qCk+k+e+++kry+ + +++ + s++p++ +l+ Pd.00g548520.m01 30 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVsSRANYTKSPKtqtQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 113 5***********************************755666666543339**************99997......4699999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MLVVLLPLHN FLCLNLFGGF KISDRLKRDE WSEGAVSSLL EAYETKWVLR NRAKLKGHDW 60 EDVARHVSSR ANYTKSPKTQ TQCKNKIESM KKRYRSESAT ADGSSWPLYP RLDLLLRGIQ 120 LPPPLPQNNH PLMLLEPSAS LPPQPPPTAP PQPIGTAQNS YGSNGVDHRV AKEDGMGMKL 180 SDHASDKNPL EIDSSTPALY SDKEKLRSKR MKRKIEKKKR RRREEVEIAE SIRWLAEVVV 240 RSEQARMDTM REIERMRVEA EAKRGEMDLK RTEIIANTQL EIARLFAAGV GKGVDSSLRI 300 GRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	KKKRRR
2	217	223	KKKRRRR
3	218	223	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-101	Trihelix family protein