PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g524410.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 33667 Da PI: 9.9839 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.7 | 9.4e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I + +R+ ++k++w+++ Pd.00g524410.m01 5 KQKWTAEEEEGLLAGVAKHGPGKWKNILKDPEfssvlIHRSNIDLKDKWRNL 56 79**********************************999***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence |
MGNQKQKWTA EEEEGLLAGV AKHGPGKWKN ILKDPEFSSV LIHRSNIDLK DKWRNLSVST 60 SGHGSKDRPR GTKVKNSVAA QHLVQNSAPI ASVRPNASPA SAPPNSSPAS VRPSASPASV 120 CPNAYPDTMM DDAVNSAPEL KSASQYDPMI FQALSTMKDK NGSDLGAILN FIEQRHEVPV 180 PPNFRRLLGP RLRRLVSQGK LEKVQNGYKL KKDATFGTKT PTPTRNQRDA RPRKLQNSGS 240 MTFTETVQDA AETAAHKLAD AEDKSFVAAV AMKEADRISK MTEDNESILQ LIEEIYERCS 300 RGEVVALA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-61 | MYB_related family protein |