PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g512940.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 328aa MW: 37035.1 Da PI: 4.7829 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.7 | 6.2e-21 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k Pd.00g512940.m01 77 KKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 130 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 135.1 | 2.4e-43 | 76 | 167 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++e+ Pd.00g512940.m01 76 EKKRRLTPDQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSNYDSILKENHKLKSEVV 167 69**************************************************************************************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence |
MEPCRFLFDP STTSSACQQG GGNMLFLGNA DHVFRGPRSV MGLMDQESSR RRSFFSSSSS 60 QDDLFDEEYY DEQLPEKKRR LTPDQVHMLE KSFETENKLE PERKTQLAKK LGLQPRQVAV 120 WFQNRRARWK TKQLERDYDL LKSSYDSLLS NYDSILKENH KLKSEVVSIN QKLEAKEETS 180 NIKAAAFAPD HADDDKCDPH VPAGDEMRDA VPISYAAGLQ YSCSVKVEDR LSSGSGGSAV 240 VDEAEGPQLV DSGDSYNFLN EDNLKVEGRG LQWEQVVAKR LDMFHLSSQL FSCTQRDAEN 300 GVPEVEREGT SCFALLGLRQ LRDTPPDS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-59 | HD-ZIP family protein |