PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g493060.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 427aa MW: 44296.1 Da PI: 6.8923 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.3 | 3.3e-35 | 86 | 191 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsss 87 ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+ ai+++tgt++ +a ++ + + s sa+ Pd.00g493060.m01 86 PTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEDAIIQATGTGTVPAIAVsvggtlkIPTTASTSAD---- 174 57999***********************************************************8888854444433221111112222.... PP TCP 88 gkaaksaakskksqksa 104 +++++s++++k+++ s+ Pd.00g493060.m01 175 DNSSPSSTTKKRKRPSN 191 12223332222222222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence |
MTSYLEDQDD DGGTSDLSTS TGDPEDNNNN GNGVVSKQPN FDETTAFQQL KEEPIDSDPP 60 PQAHSIGMVP VAMQMPMSVA VPVSNPTRRA STKDRHTKVE GRGRRIRIPA TCAARIFQLT 120 RELGHKSDGE TVRWLLEHAE DAIIQATGTG TVPAIAVSVG GTLKIPTTAS TSADDNSSPS 180 STTKKRKRPS NSEFVDVKND AVTQSSGLAP VGPAAPQGLV PVWAVGGAGL MVPANAFWMG 240 PVGSGGGPSG PQPQIWALSP TVTPVFNVAG ATRPVSSFVA NNGGGVEVRA PSPALSNSAA 300 STSTVGPRAA KRSSTTMAPS VSSSSNNSNG SGSGASKAQM LRDFSLEIYD KQELQFMGRP 360 VGTPTTHQHQ TQRGSHARCG GVDESGGINE KDVIPPRGGW AIVEAVNGWA MRSRAPRDVV 420 EVVGSTG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-54 | TCP family protein |