PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g483070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 662aa MW: 73895.7 Da PI: 9.8217

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g483070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	569	618	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Pd.00g483070.m01 569 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFdgaKHRTYVDLKDKWKTL 618 567888899***************99888889***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIKKKLEANQ IRAFEILASV AGKLLQESEH 60 PLPTNDSCGK DAHFIFDDTT KSKQEKGNLS KEDPCERGSC DEQTLLCVGR MQECQQSYTL 120 NGVSHSQEKF SYEINRASKS FDHSESIYSN KVFSDSPLSG DSVEEKPRGV LKRKLETGPS 180 KDTSIEDERT QILGNSEDIM KVEGMPPELV SCGHDVKTSF SGDCKNHDPL LCHCANIKVD 240 SRDDDENCVR YAQPLSVVKE FEHPPDASDE KINNLAASRH WRVAPERRIG GYSRNDGKIR 300 QVYRHGRTCY THQRSQKIYP FKKRKFFNRM PLTTPDRGFN CESIFNSPDK RVNSDNYCAE 360 IGPSSSTTGG QVPLKSSDCN VKLSIKSFKV PDLFIEIPAT ATVGSLKRTV MEAVTSILGD 420 GLHVGILVRG KKVRDDNKTL LQTGISQDEK SRNLGFMLEP KRAKLTYSPR SKGPSLPSGR 480 SRELTRHSAS LVTQPGTSNV SPNPPVINFG GCVKRDLNAV PSLPSTSTEK TPQASQALVA 540 VPPISMNALA VVPFHRKSGH PEYVQRRIRR PFSVPEVEAL VQAVEKLGTG RWRDVKLRAF 600 DGAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLAAHACWS QRRAKQQIKA 660 AV

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIKKKLEANQ IRAFEILASV AGKLLQESEH  60
PLPTNDSCGK DAHFIFDDTT KSKQEKGNLS KEDPCERGSC DEQTLLCVGR MQECQQSYTL  120
NGVSHSQEKF SYEINRASKS FDHSESIYSN KVFSDSPLSG DSVEEKPRGV LKRKLETGPS  180
KDTSIEDERT QILGNSEDIM KVEGMPPELV SCGHDVKTSF SGDCKNHDPL LCHCANIKVD  240
SRDDDENCVR YAQPLSVVKE FEHPPDASDE KINNLAASRH WRVAPERRIG GYSRNDGKIR  300
QVYRHGRTCY THQRSQKIYP FKKRKFFNRM PLTTPDRGFN CESIFNSPDK RVNSDNYCAE  360
IGPSSSTTGG QVPLKSSDCN VKLSIKSFKV PDLFIEIPAT ATVGSLKRTV MEAVTSILGD  420
GLHVGILVRG KKVRDDNKTL LQTGISQDEK SRNLGFMLEP KRAKLTYSPR SKGPSLPSGR  480
SRELTRHSAS LVTQPGTSNV SPNPPVINFG GCVKRDLNAV PSLPSTSTEK TPQASQALVA  540
VPPISMNALA VVPFHRKSGH PEYVQRRIRR PFSVPEVEAL VQAVEKLGTG RWRDVKLRAF  600
DGAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLAAHACWS QRRAKQQIKA  660
AV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	325	QKIYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-109	MYB_related family protein