PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g464910.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 474aa MW: 52000.8 Da PI: 7.1851

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g464910.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.3e-17	140	189	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pd.00g464910.m01 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189 78*****************......55**********************998 PP
2	AP2	42.1	2.1e-13	232	282	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Pd.00g464910.m01 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 282 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDE DSSTLNFLSP 60 NDVAADDNAH CDARTIQLFP LAQSVLSSSS SSSSSRKHWL GLSSNSGLEV EPSYYAPAEQ 120 IVPLQQRVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY 180 DRAAIKFRGT EADINFNVSD YEDDIKQMSN FTKEEFVHIL RRQSTGFSRG SSKYRGVTLH 240 KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFE PNSYDGQIMS 300 EAHNGGSDKS LDLNLGIAPP LVSELQKNNS NLSSFPVQLG CDDIPIHMRT RNENSAPAPM 360 RAQLSHGSMV ASEEPPIMSN INSSFFPIQV ERATEKRMDV NSFPNWAWQL QGLNGGAPPM 420 PLFSAAASSG FPSSTATSPP AAVTQLHFPN TTILHHHCSP STVTTNIPGF YCRS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDE DSSTLNFLSP  60
NDVAADDNAH CDARTIQLFP LAQSVLSSSS SSSSSRKHWL GLSSNSGLEV EPSYYAPAEQ  120
IVPLQQRVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGT EADINFNVSD YEDDIKQMSN FTKEEFVHIL RRQSTGFSRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFE PNSYDGQIMS  300
EAHNGGSDKS LDLNLGIAPP LVSELQKNNS NLSSFPVQLG CDDIPIHMRT RNENSAPAPM  360
RAQLSHGSMV ASEEPPIMSN INSSFFPIQV ERATEKRMDV NSFPNWAWQL QGLNGGAPPM  420
PLFSAAASSG FPSSTATSPP AAVTQLHFPN TTILHHHCSP STVTTNIPGF YCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-100	AP2 family protein