PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g417480.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 612aa MW: 67811.1 Da PI: 6.5993

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g417480.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	252	267	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 tGtCk+ ++CkF+H++ Pd.00g417480.m01 252 TGTCKFVPNCKFNHPR 267 8*************96 PP
2	zf-CCCH	27.8	4.5e-09	339	359	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +++tGtC++G++CkF+H+ Pd.00g417480.m01 339 CWSYLKTGTCNFGPSCKFNHP 359 668*****************8 PP
3	zf-CCCH	23.3	1.2e-07	410	434	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++++G Ck +C+F+H+ Pd.00g417480.m01 410 GEKECPYYMKNGSCKSATNCTFNHP 434 7899********************9 PP
4	zf-CCCH	21.1	5.5e-07	538	560	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++f+r G Ck+ ++Ck++H++ Pd.00g417480.m01 538 ICNYFLRKGDCKHRSNCKYHHPK 560 7********************96 PP
5	zf-CCCH	17.5	7.4e-06	581	605	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ CkF H+ Pd.00g417480.m01 581 GENICAQYSSYGICNSGPACKFDHP 605 6779********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MFSAAAVAVR LLLLSASVVY VLYKFWRSGR QTESSPNSGD NGVVPPHSSK NDVVPPHSSK 60 NDVVPSDGYL AIVQEILKND HVFLNKIRTL DPAVLDKLLK FDPVALDKLL RIEPAVLRDS 120 ALLDPAIIDA ICELSEKEEG DEEADWSCSR PVTESSLVIG VPTNSGNNDV VPSNSGNNDV 180 VPPNSGDNDV VPPPELSDRD CTILEEILKD NHVLLDKILA LEPAFLDRLR KIKPAVLREM 240 VFDPAELDPV ITGTCKFVPN CKFNHPRITT KNNRNSFRSG GRRPNLYTTP NHGNDNVFPP 300 NPRDPDHENG NGNETQSEER DKERSRIHHY PVRFEDGDCW SYLKTGTCNF GPSCKFNHPC 360 RRKNRKNNQN YFRSGGCKPR NAFSFNPRRG EPSVAPVQKL NFMDLPIRPG EKECPYYMKN 420 GSCKSATNCT FNHPDPTTIG ESGPPSGYID GGPAPVQGAS SSTAWDSLCV PMIPPSQGIP 480 SQNTEWNGSQ DPEYLPERSI PAPPPYVMNK AVTETNIYEQ NPQQKQVEEF PEQPGQHICN 540 YFLRKGDCKH RSNCKYHHPK NQTAVSPSCA LSDKGLPLRP GENICAQYSS YGICNSGPAC 600 KFDHPSLSTF LL

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MFSAAAVAVR LLLLSASVVY VLYKFWRSGR QTESSPNSGD NGVVPPHSSK NDVVPPHSSK  60
NDVVPSDGYL AIVQEILKND HVFLNKIRTL DPAVLDKLLK FDPVALDKLL RIEPAVLRDS  120
ALLDPAIIDA ICELSEKEEG DEEADWSCSR PVTESSLVIG VPTNSGNNDV VPSNSGNNDV  180
VPPNSGDNDV VPPPELSDRD CTILEEILKD NHVLLDKILA LEPAFLDRLR KIKPAVLREM  240
VFDPAELDPV ITGTCKFVPN CKFNHPRITT KNNRNSFRSG GRRPNLYTTP NHGNDNVFPP  300
NPRDPDHENG NGNETQSEER DKERSRIHHY PVRFEDGDCW SYLKTGTCNF GPSCKFNHPC  360
RRKNRKNNQN YFRSGGCKPR NAFSFNPRRG EPSVAPVQKL NFMDLPIRPG EKECPYYMKN  420
GSCKSATNCT FNHPDPTTIG ESGPPSGYID GGPAPVQGAS SSTAWDSLCV PMIPPSQGIP  480
SQNTEWNGSQ DPEYLPERSI PAPPPYVMNK AVTETNIYEQ NPQQKQVEEF PEQPGQHICN  540
YFLRKGDCKH RSNCKYHHPK NQTAVSPSCA LSDKGLPLRP GENICAQYSS YGICNSGPAC  600
KFDHPSLSTF LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-80	C3H family protein