PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g393170.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 419aa MW: 47659.5 Da PI: 9.3657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.9e-19 | 56 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++++LA++lgL+ rqV +WFqNrRa++k Pd.00g393170.m02 56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWK 109 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.8e-41 | 56 | 147 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eqvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy Lk+ yd lk + ++Le+++++L+e+l++ Pd.00g393170.m02 56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKADYDGLKLNFDSLERQNKALAEKLRH 147 9**************************************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence |
MKRFSSSSDS LGVLVSNFPP KEEEKHGKDN YGYSKEFQAM LDSLDQEDCG EEMTGKKRRL 60 SSEQVKALER NFEVENKLEP ERKAKLAEEL GLQPRQVAIW FQNRRARWKT KQLERDYGIL 120 KADYDGLKLN FDSLERQNKA LAEKLRHLKA KLSRDSAESN GSAKEESPIS MCKSSVMEQS 180 RHQDFSDNGD NAEVNLFKNL KSKDGSSDSD SNGVMKEESN GNSSLGYNNG HSSLSSNSMV 240 NWFQLSDSRS VAGKGFQTQL VRMEEQSLFS TEESCNFFSV DQAPTLHCRK ALNPLQWQSH 300 TPKPRIIICT TSSTSEPHFS LFRRSEEMAL GLILGLGRAF RRKRTSSLDI LSSKRAPRDY 360 YKGKNCKPIG FHTRKAKYVV QQEKLPNYVV PDLTDFKLKP YVSQCPREIK TSESAESIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 85 | KKRRLSSEQVKALERNFEVENKLEPERKAK |
2 | 104 | 112 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 1e-48 | HD-ZIP family protein |