PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g390830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 418aa MW: 47460.4 Da PI: 9.1229

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g390830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++++LA++lgL+ rqV +WFqNrRa++k Pd.00g390830.m01 56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWK 109 45689************************************************9 PP
2	HD-ZIP_I/II	128.5	2.8e-41	56	147	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eqvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy Lk+ yd lk + ++Le+++++L+e+l++ Pd.00g390830.m01 56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKADYDGLKLNFDSLERQNKALAEKLRH 147 9**************************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MKRFSSSSDS LGVLVSNFPP KEEEKHGKDS YGYSKEFQAM LDSLDQEDCG EEMTGKKRRL 60 SSEQVKALER NFEVENKLEP ERKAKLAEEL GLQPRQVAIW FQNRRARWKT KQLERDYGIL 120 KADYDGLKLN FDSLERQNKA LAEKLRHLKA KLCRDSAESN GSAKEESPIS MCKSSVMEQS 180 RHQDFSDNGD NAEMNLFKNL KSKDGSSDSD SNGVMKEESN GNSSLGYNNG HSSLSSNSMV 240 NWFQLSDARS VAGKGFQTQL VRMEEQSLFS TEESCNFFSV DQAPTLHCRK ALNPLQWQSH 300 TPKPRIIICT TSSTSEPHFS LFRSEEMALG LILGLGRAFR RKRTSSLDIL SSKRAPRDYY 360 KGKNCKPIGF HTRKAKYVVQ QEKLPNYVVP DLTDVKLKPY VSQCPREIKT SESAESIK

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MKRFSSSSDS LGVLVSNFPP KEEEKHGKDS YGYSKEFQAM LDSLDQEDCG EEMTGKKRRL  60
SSEQVKALER NFEVENKLEP ERKAKLAEEL GLQPRQVAIW FQNRRARWKT KQLERDYGIL  120
KADYDGLKLN FDSLERQNKA LAEKLRHLKA KLCRDSAESN GSAKEESPIS MCKSSVMEQS  180
RHQDFSDNGD NAEMNLFKNL KSKDGSSDSD SNGVMKEESN GNSSLGYNNG HSSLSSNSMV  240
NWFQLSDARS VAGKGFQTQL VRMEEQSLFS TEESCNFFSV DQAPTLHCRK ALNPLQWQSH  300
TPKPRIIICT TSSTSEPHFS LFRSEEMALG LILGLGRAFR RKRTSSLDIL SSKRAPRDYY  360
KGKNCKPIGF HTRKAKYVVQ QEKLPNYVVP DLTDVKLKPY VSQCPREIKT SESAESIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	85	KKRRLSSEQVKALERNFEVENKLEPERKAK
2	104	112	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	3e-48	HD-ZIP family protein