PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g386540.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 436aa    MW: 48512.2 Da    PI: 7.0333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g386540.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.21.2e-78554231374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l +lLl++Ae v++++  +a++l +  + l+s+ g+++qR++ yft+AL+++  r   e+    ++se se++ + +++++++    +P l  
  Pd.00g386540.m01  55 LAHLLLAFAEKVAKQQYGCARKLQNLCHFLSSSCGNSVQRVVYYFTKALQEKTDR---ET--GRNASEGSESRDVLAMHFQEAMASSTPALMA 142
                       579*****************9988888888************************9...22..2355555555577778888889999998875 PP

              GRAS  94 s..h...ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                       +  +    +  qaI+e+v++++++H iD+ i+ G++ + L+qaLa+R e p   l++T+vg    +s+e++e tg+rLa+fAe+l++pf+f+v
  Pd.00g386540.m01 143 CvdYclkQIGIQAIVESVASAKKIHFIDLAIKTGGHCIVLMQALATRYECPIeLLKVTAVGV---TSREKIEDTGRRLAQFAEALKLPFSFKV 232
                       411311145679***********************************97665499*******...68************************** PP

              GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        ++k+++d++ ++++++ gEa aV + + l ++++++ ++es    ++k++++l+P+++v++e ea+hns++F +rf eal yysa f++l++
  Pd.00g386540.m01 233 AMVKDIKDVNEDTFELEDGEAAAVYCPILLCSTMRQPNCSES----LIKVLRNLNPRLMVITEIEANHNSPTFTNRFNEALLYYSAYFECLDV 321
                       9********************************999999988....*********************************************** PP

              GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365
                        + r s  r+ +E+ +l+ ei+n++a eg+er+ r+ +   Wr  + e+G+ +++ls +   qa+l+ ++++ +   +++ + + l+ gWk+ 
  Pd.00g386540.m01 322 CMDRGSAYRMELEETYLSLEIKNIIASEGKERIIRRMKIDAWRTLFAECGMVEAELSLSSLYQADLVAKQFAcGSCCTLDTNGKGLLVGWKGT 414
                       ************************************************************************9999***************** PP

              GRAS 366 pLvsvSaWr 374
                       p++s+S+W+
  Pd.00g386540.m01 415 PILSLSVWK 423
                       ********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MSCVPGLSTV EVMRIARASF VQFSSRRYAD DCMPARVLGS APLGLSDQET KDVELAHLLL  60
AFAEKVAKQQ YGCARKLQNL CHFLSSSCGN SVQRVVYYFT KALQEKTDRE TGRNASEGSE  120
SRDVLAMHFQ EAMASSTPAL MACVDYCLKQ IGIQAIVESV ASAKKIHFID LAIKTGGHCI  180
VLMQALATRY ECPIELLKVT AVGVTSREKI EDTGRRLAQF AEALKLPFSF KVAMVKDIKD  240
VNEDTFELED GEAAAVYCPI LLCSTMRQPN CSESLIKVLR NLNPRLMVIT EIEANHNSPT  300
FTNRFNEALL YYSAYFECLD VCMDRGSAYR MELEETYLSL EIKNIIASEG KERIIRRMKI  360
DAWRTLFAEC GMVEAELSLS SLYQADLVAK QFACGSCCTL DTNGKGLLVG WKGTPILSLS  420
VWKFHAVNAK TAKYLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-50GRAS family protein