PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g383540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HB-PHD

Protein Properties

Length: 807aa MW: 91180 Da PI: 9.9904

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g383540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.3	4.1e-11	584	627	10	53
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e L ++F +n ps++ +e L+k+lgL+ ++V+ WF+N R+ Pd.00g383540.m01 584 KAVEKLRQVFSENELPSRDVKENLSKELGLDPEKVSKWFKNARY 627 67899*************************************97 PP
2	PHD	40	8.7e-14	342	397	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+++fH+kCl+++l++e++p+g w+C+ C++k Pd.00g383540.m01 342 FCAKCKLNEAfpDNDIILCDgTCNSAFHQKCLDPPLDTENIPRGdqGWFCKFCECK 397 699999955455******56*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MALRRFYSEI KGLKVKELPS YVKPMLSVDC AKKTVQRGLD NYHANVATSS TSSTPRSMAI 60 DLNWLMSALG VGSPIKFTWP LGILPITFLQ SPAVHRSLFF FSIDTLVSRM RGLGKKSSLK 120 ESGKPRYSNS VAKLISSPKF RKGGKVSHVK KIKPRSKTII ASCLSKKRGA DSTRKGSRNN 180 DTDKKLMSRK GVHKVHDTNS SKKLSSVKLQ DEKFSFKDSD KKGETADGQV KLRIKRRRKK 240 KLQKDKVELD ETSRLQRRTR YLLIKIKLEQ NLIDAYSGEG WKGQSREKIK PEKELQRAKK 300 QILKCKLGIR DAIHQLYSLS SVGSMADSVI AADGSVYHEH IFCAKCKLNE AFPDNDIILC 360 DGTCNSAFHQ KCLDPPLDTE NIPRGDQGWF CKFCECKMEI LEVVNAHLGT SFSNDCGWQD 420 VFKEEAAFPD GENSLLNPDE EWPSDDSEDD DYNPERNENS CSFSMGGTED NASDDELSTD 480 ISVGSDESTD GEVVSGRRQR RRVDYKKLYD EMFGKDGPLH EQISDDEDWG PVKRKRREKE 540 SDAASTLMTL YESERIPDVT PTEVKSKHPP DTQVRRACFR IPRKAVEKLR QVFSENELPS 600 RDVKENLSKE LGLDPEKVSK WFKNARYLAL KTRKEESATN LHTVTPGISK ESTLENVTEK 660 AADLMASDSD DFLAETVVHS PRNVKKSFRR KHPKSLSSPL RKNQQKVSSC GSPAKRNKDG 720 MELSDNVSLK KLLKERTKEK KANLIAGGGC RVAELEMERL CKAKGRLENM RQKLLKFQNA 780 KAKKSNKSLL HEQSVIYVPI AELKDKV

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MALRRFYSEI KGLKVKELPS YVKPMLSVDC AKKTVQRGLD NYHANVATSS TSSTPRSMAI  60
DLNWLMSALG VGSPIKFTWP LGILPITFLQ SPAVHRSLFF FSIDTLVSRM RGLGKKSSLK  120
ESGKPRYSNS VAKLISSPKF RKGGKVSHVK KIKPRSKTII ASCLSKKRGA DSTRKGSRNN  180
DTDKKLMSRK GVHKVHDTNS SKKLSSVKLQ DEKFSFKDSD KKGETADGQV KLRIKRRRKK  240
KLQKDKVELD ETSRLQRRTR YLLIKIKLEQ NLIDAYSGEG WKGQSREKIK PEKELQRAKK  300
QILKCKLGIR DAIHQLYSLS SVGSMADSVI AADGSVYHEH IFCAKCKLNE AFPDNDIILC  360
DGTCNSAFHQ KCLDPPLDTE NIPRGDQGWF CKFCECKMEI LEVVNAHLGT SFSNDCGWQD  420
VFKEEAAFPD GENSLLNPDE EWPSDDSEDD DYNPERNENS CSFSMGGTED NASDDELSTD  480
ISVGSDESTD GEVVSGRRQR RRVDYKKLYD EMFGKDGPLH EQISDDEDWG PVKRKRREKE  540
SDAASTLMTL YESERIPDVT PTEVKSKHPP DTQVRRACFR IPRKAVEKLR QVFSENELPS  600
RDVKENLSKE LGLDPEKVSK WFKNARYLAL KTRKEESATN LHTVTPGISK ESTLENVTEK  660
AADLMASDSD DFLAETVVHS PRNVKKSFRR KHPKSLSSPL RKNQQKVSSC GSPAKRNKDG  720
MELSDNVSLK KLLKERTKEK KANLIAGGGC RVAELEMERL CKAKGRLENM RQKLLKFQNA  780
KAKKSNKSLL HEQSVIYVPI AELKDKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	241	KRRRKKK
2	236	242	RRRKKKL
3	237	267	RRKKKLQKDKVELDETSRLQRRTRYLLIKIK
4	237	243	RRRKKKL
5	238	268	RRKKKLQKDKVELDETSRLQRRTRYLLIKIK
6	497	502	RRQRRR
7	534	539	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-153	HB-PHD family protein