PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g376410.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 126aa MW: 14641 Da PI: 9.9561 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.5 | 2e-12 | 6 | 35 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++++ LA++l+L rqV vWFqNrRa+ k Pd.00g376410.m01 6 EKQKQALARQLNLRPRQVEVWFQNRRARTK 35 6899************************98 PP | |||||||
2 | HD-ZIP_I/II | 91.9 | 7.5e-30 | 6 | 70 | 26 | 91 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Pd.00g376410.m01 6 EKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 70 589***********************************************************9.55 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence |
MWRDREKQKQ ALARQLNLRP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ETLTDENRRL 60 QKELQELKAL KLSQPLYMHM PAATLTMCPS CERIGGVGSE GASKSPFSMA PKPHFYNHFT 120 NPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 38 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 6e-59 | HD-ZIP family protein |