PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g353080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 703aa MW: 76887.3 Da PI: 6.7777

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g353080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Pd.00g353080.m01 279 PCPDFRK-GACRRGDMCEYAHG 299 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MNNHLTVETD DTFASLLELA ANNDIESFKR SIERDPSAID EIGLWYCRQK GSKQMVNEQR 60 TPLMVAAIYG SIDVIKLILS LSDADVNRAC GLDRSTALHC AASGGAENAV DVVRLLLAAG 120 ADPNLVDANG HRPVEVIVVP PRLQNVRLAL EELLMINGSA GEQILTVSTR TLHSSSPPLS 180 ASPENGSPSA LDFTCSPTKS KFYNLPVSSA SEKKEYPVDP SLPDIKNSIY STDEFRMYSF 240 KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV 300 FECWLHPAQY RTRLCKDGTS CARRVCFFAH TAEELRPLYV STGSAVPSPR SSTSGASAMD 360 FAAAMSLLPG SPSSVNVMSP SPFTPPMSPS ANGMSHSSLA WPQPNVPALH LPGSNLQSSR 420 LRSSLCARDM PANDYDILPE FDMQQQQLLN EFSCLSQPSM SSNSLNRSGR LKTLTPSNLD 480 DLFSAESLSP RYSDQSLQSG VFSPTHKSAV LNQFQQQQSM LSPIHTNFSP KSVDHPLLQA 540 SYGVPSSGRM SPRNVEPISP MGSRVSMLAQ REKQQQFRRL SSRELGSNSA SNVGSPVNCW 600 SKWGSSNGKP DWAVTTDELG KLRRSSSFEL LHNGEEPDLS WVQSLVKESP TEIKEKLTPI 660 SGVTATGSSS EGSNANSQRE SVDHAVLGAW IDQMHLDLVA QQN

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MNNHLTVETD DTFASLLELA ANNDIESFKR SIERDPSAID EIGLWYCRQK GSKQMVNEQR  60
TPLMVAAIYG SIDVIKLILS LSDADVNRAC GLDRSTALHC AASGGAENAV DVVRLLLAAG  120
ADPNLVDANG HRPVEVIVVP PRLQNVRLAL EELLMINGSA GEQILTVSTR TLHSSSPPLS  180
ASPENGSPSA LDFTCSPTKS KFYNLPVSSA SEKKEYPVDP SLPDIKNSIY STDEFRMYSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CARRVCFFAH TAEELRPLYV STGSAVPSPR SSTSGASAMD  360
FAAAMSLLPG SPSSVNVMSP SPFTPPMSPS ANGMSHSSLA WPQPNVPALH LPGSNLQSSR  420
LRSSLCARDM PANDYDILPE FDMQQQQLLN EFSCLSQPSM SSNSLNRSGR LKTLTPSNLD  480
DLFSAESLSP RYSDQSLQSG VFSPTHKSAV LNQFQQQQSM LSPIHTNFSP KSVDHPLLQA  540
SYGVPSSGRM SPRNVEPISP MGSRVSMLAQ REKQQQFRRL SSRELGSNSA SNVGSPVNCW  600
SKWGSSNGKP DWAVTTDELG KLRRSSSFEL LHNGEEPDLS WVQSLVKESP TEIKEKLTPI  660
SGVTATGSSS EGSNANSQRE SVDHAVLGAW IDQMHLDLVA QQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein