PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g348960.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 721aa MW: 79552.1 Da PI: 5.9637

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g348960.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	298	318	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pd.00g348960.m01 298 PCPEFRK-GACRQGDACEYAHG 318 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MRAPHDGRLF GPFYDVINPT ENSNCFAGET KARVLESIEP LSFVDAFKNS KSLVVWFKEE 60 ELGFLSHSVF CSFYHFSVVR KGEISMCSGS KRKPSSTDLI MEREKQEGMR YSFSILLELS 120 ASDDLDGFKR AVEEEGHDVD EASYWYGRLI GSKKMGFEER TPLMIGAMFG DLIAPAYSST 180 FNSRKKALEV MLKGVPSIDE PFDFSEQMVY ETEGQEQQEI TTPRASKDGT EKKEYPIDLS 240 LPDIKNGIYS TDEFRMYTFK VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP 300 EFRKGACRQG DACEYAHGIF ECWLHPAQYR TRICKDETGC TRRVCFFAHK PEELRPLYAS 360 TGSAVPSPRS FSANASSLDM GSISPLSLNS PSMLIPPAST PPMTPSGASS PRSGNMWQNQ 420 PNIAPPTLQL PGSRLKSTLS ARDMDLDIEL LSLESHRRRQ QRLIDEISGS PSSWNTGLSS 480 PSAFAASGNR TGELNRIGGV NPTNLDDIFG SLDPAILPQY NGPASQLHSP TGIQMRQNMN 540 LQPRPSYSAS LSSSPVRASP LFGADASSAA AVFSSRSAAF AKRSQSFIER SAGNRNPGFS 600 SPADSGTLMP SNVSDWGSPG GKLDWGMQGE ELNKMRKSAS FGFRSSGSSF SNAPTMMPGA 660 ADEPDVSWVQ SLVKDAPPPS QLGQFGFEDQ QQPQCHPNNG GPEMLPAWVE QLYLEQEQMV 720 A

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MRAPHDGRLF GPFYDVINPT ENSNCFAGET KARVLESIEP LSFVDAFKNS KSLVVWFKEE  60
ELGFLSHSVF CSFYHFSVVR KGEISMCSGS KRKPSSTDLI MEREKQEGMR YSFSILLELS  120
ASDDLDGFKR AVEEEGHDVD EASYWYGRLI GSKKMGFEER TPLMIGAMFG DLIAPAYSST  180
FNSRKKALEV MLKGVPSIDE PFDFSEQMVY ETEGQEQQEI TTPRASKDGT EKKEYPIDLS  240
LPDIKNGIYS TDEFRMYTFK VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP  300
EFRKGACRQG DACEYAHGIF ECWLHPAQYR TRICKDETGC TRRVCFFAHK PEELRPLYAS  360
TGSAVPSPRS FSANASSLDM GSISPLSLNS PSMLIPPAST PPMTPSGASS PRSGNMWQNQ  420
PNIAPPTLQL PGSRLKSTLS ARDMDLDIEL LSLESHRRRQ QRLIDEISGS PSSWNTGLSS  480
PSAFAASGNR TGELNRIGGV NPTNLDDIFG SLDPAILPQY NGPASQLHSP TGIQMRQNMN  540
LQPRPSYSAS LSSSPVRASP LFGADASSAA AVFSSRSAAF AKRSQSFIER SAGNRNPGFS  600
SPADSGTLMP SNVSDWGSPG GKLDWGMQGE ELNKMRKSAS FGFRSSGSSF SNAPTMMPGA  660
ADEPDVSWVQ SLVKDAPPPS QLGQFGFEDQ QQPQCHPNNG GPEMLPAWVE QLYLEQEQMV  720
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-139	C3H family protein