PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g345400.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19475.1 Da PI: 6.8967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 7.9e-39 | 15 | 109 | 6 | 100 |
DUF260 6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ Pd.00g345400.m01 15 RILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKAQ 107 689****************************************************************************************99 PP DUF260 99 ee 100 +e Pd.00g345400.m01 108 AE 109 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MYGSSPRKWE GGRERILRRR CADKCVLAPY FPPTEPAKFT IAHRVFGASN IIKFLQDLPE 60 SQRADAVSSM VYEASARIRD PVYGCAGAIC HLQKQVNELQ AQLAKAQAEL VNMQCQQANL 120 VALICMEMTQ SNEQGSPQQS LDHNFIASSH GSNQSNLSFL DDTTTLGSLW EPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 5e-63 | LBD family protein |