PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g335820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 494aa    MW: 55722.4 Da    PI: 6.8414
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g335820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.84.8e-87834191345
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++ Ll  A+av++++ + a + L++l + +s  gd++qR++ayf+ +Laarl+   s  ++ +  ++ts    +ee+ a++ ++ vsP+++f
  Pd.00g335820.m01  83 LIHMLLITATAVNENNVSSALENLSELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFFDMIMKEPTS----EEEFVAFTSLYRVSPYYQF 171
                       6899***************************************************999999888777775....78889999*********** PP

              GRAS  94 shltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfef 178
                       +h+taNqaI ea+e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    s +el+et++rL +f + + ++ fef
  Pd.00g335820.m01 172 AHFTANQAIIEAFEKEeeknnRALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGQ----SLDELRETENRLMSFSKGFrNLIFEF 260
                       **************9977777788**********************99755566*********....9****************97579**** PP

              GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                       + l    l   +l +Lr k++E++aVnlv++l +l  +s+++++     Lk v  l+P +v++veqe +++  +Fl rf+e+l+y++a+fdsl
  Pd.00g335820.m01 261 QGL----LRGSKLINLRKKRNETIAVNLVFHLNTLS-NSLKISD----SLKSVHLLNPSIVILVEQEGSRSPRNFLSRFMESLHYFAAMFDSL 344
                       **8....66667789*****************9997.6666666....9******************************************** PP

              GRAS 272 eaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                       +  lp es er ++E+  lg+ei++++   +++    + e++e+W++r+e+ GF+ ++ls+k   qa+lll+   
  Pd.00g335820.m01 345 DDCLPLESAERLSIEKNHLGKEIKSMLNYDNDDvNCSKIEKMETWKARMESHGFEGINLSSKSKIQARLLLKIRT 419
                       *****************************9999788999*******************************97433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    
MEDIDEEELL NLSLAIVTTS GGERVKKRTR RDHKNVLVSP LNSYEGCEGK IFRLLQMREQ  60
MLKLDHKKKG AHVLDEDGKG LHLIHMLLIT ATAVNENNVS SALENLSELY KSVSLCGDSV  120
QRVVAYFADG LAARLLTRKS PFFDMIMKEP TSEEEFVAFT SLYRVSPYYQ FAHFTANQAI  180
IEAFEKEEEK NNRALHVIDF DVSYGFQWPS LIQSLSEKAT SGNRISLRIT GFGQSLDELR  240
ETENRLMSFS KGFRNLIFEF QGLLRGSKLI NLRKKRNETI AVNLVFHLNT LSNSLKISDS  300
LKSVHLLNPS IVILVEQEGS RSPRNFLSRF MESLHYFAAM FDSLDDCLPL ESAERLSIEK  360
NHLGKEIKSM LNYDNDDVNC SKIEKMETWK ARMESHGFEG INLSSKSKIQ ARLLLKIRTH  420
YCPLQFDGES SGGSTPGFKV FERDDGRTIS LGWQDRKAME AGDEAAASTV PSQGEKIDIS  480
KDVSAVKKGG CCSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-48GRAS family protein