PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g318580.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27693.4 Da PI: 8.302

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g318580.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.7	1e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKKA+ELSvLCda+va+ii ss+gklye+ Pd.00g318580.m01 9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAQVALIISSSRGKLYEFG 58 69**********************************************95 PP
2	K-box	90.7	2.7e-30	79	171	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++e+++++l+qe++kLk ++e+Lq +qRhllGedLe+L lkeL +Le+qL+k l+k R++K+e+l++ +eel++ke++l e+nk+L+++lee Pd.00g318580.m01 79 NVAENETQNLYQEVSKLKVKYESLQLSQRHLLGEDLEKLRLKELVNLENQLDKTLSKARQRKTEMLYDRLEELRQKENDLGEKNKQLKSELEE 171 38999************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGRVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AQVALIISSS RGKLYEFGST 60 DVNKILERYR QCCYSLQGNV AENETQNLYQ EVSKLKVKYE SLQLSQRHLL GEDLEKLRLK 120 ELVNLENQLD KTLSKARQRK TEMLYDRLEE LRQKENDLGE KNKQLKSELE EEEHAQATLQ 180 GPGELPLTKD NRIESEHPSL RLQIWDHQPV PQEKAADDDQ GRTMVGGSKS NCNQRGWLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-69	MIKC_MADS family protein