PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g318020.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 297aa    MW: 33505.3 Da    PI: 7.4985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g318020.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.4e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l +++ ++G g+W++++   g+ R +k+c++rw +yl
  Pd.00g318020.m01 15 KGLWSPEEDQRLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                      678*******************************************97 PP
2Myb_DNA-binding551.8e-1768113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg ++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Pd.00g318020.m01  68 RGTFSKQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                       899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGCKSSDKPK PKHRKGLWSP EEDQRLRNYI LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSKQEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKA  120
EEIMEGQSKS QYTSTTSSSD NLECSPSPHK PTTCINPSYE SVEKSPTLIP QTGDQTHRSP  180
LPKILFAEWL SLDHVHGGSY ANNIGEAGVS REGFDHSSNN LQADHALGHD FLLNNEGTFE  240
NGFHYGLSHH GAATEMINSS QFKFEDQISG PGFVDFISGG DMCSDFNLHN DVMYFYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.16e-64MYB family protein