PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g284810.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 945aa MW: 106661 Da PI: 8.6609

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g284810.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.3	6.4e-25	777	851	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g284810.m02 777 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 851 689*****************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence
MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK 60 KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT 120 CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA 180 VRALVKKVPS NARGKKTEEQ EDKEFLQQST PKTSTKRRND SGGDQQSKVA RLEGDVSTSW 240 DVSARDATDL ESKLEAQTKE LWALKDDLKK HVTTAELREM LEANVQDSTG SELDLRERCA 300 DGMMFGALSR CPICSGFLRY SGGMYRCHGY ISEWSKCSYS TEEPERLKWK WKIPEDTDNQ 360 YLNKWFKSQK VEKPVRILPP STPNKPSGSQ AFNGQSQSSN SENLADLKVA FRGLPQESME 420 EWSRKIEGVA GLVHSKIKKD TNCLVVSGAL DDKDAEMRKA RRMKLPIVRE DYLVDCFKKQ 480 KKLPFDLYKV EVVGEASSMV TVKVKGRSAV HESSGLQDTC HILEDGKSIY NTTLSMSDLS 540 TGVNRLVGFD ADTDDSLDEK YRKLRCDIDP IPHDSEDFRL IKKYLLTTHA PTHTDWSLEL 600 EEVFALEREG EFDKFAPYRK KLNNRMLLWH GSRFTNFFGK GIYFADLVSK SAQYCYTDKK 660 NPVGLMLLSE VALGEVHELK KATYMDKPPK GKHSTKGLGK KIPQESEYVK WKDDVIVPCG 720 KPVPSNIKAS ELMYNEYIVY DKAQVKMQFL LKVRFHHKRK IPAGMPQGDK LQQFPGPARF 780 AAIHKVFGAS NVSKLLLHVP VHDRCEAVVT IAYEAQARIR DPVYGCVAHI FSLQQQVACL 840 QAQLMQVKAQ LAHQSLVDSR NIESTQWPGN VNGVTNFPNY PSYMNPISPQ SSLESIDHNC 900 SDIAMNMQEI QSSRDDFSYQ ACSKRRPYNG DLGELQALAL RMMRN

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence

MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK  60
KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT  120
CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA  180
VRALVKKVPS NARGKKTEEQ EDKEFLQQST PKTSTKRRND SGGDQQSKVA RLEGDVSTSW  240
DVSARDATDL ESKLEAQTKE LWALKDDLKK HVTTAELREM LEANVQDSTG SELDLRERCA  300
DGMMFGALSR CPICSGFLRY SGGMYRCHGY ISEWSKCSYS TEEPERLKWK WKIPEDTDNQ  360
YLNKWFKSQK VEKPVRILPP STPNKPSGSQ AFNGQSQSSN SENLADLKVA FRGLPQESME  420
EWSRKIEGVA GLVHSKIKKD TNCLVVSGAL DDKDAEMRKA RRMKLPIVRE DYLVDCFKKQ  480
KKLPFDLYKV EVVGEASSMV TVKVKGRSAV HESSGLQDTC HILEDGKSIY NTTLSMSDLS  540
TGVNRLVGFD ADTDDSLDEK YRKLRCDIDP IPHDSEDFRL IKKYLLTTHA PTHTDWSLEL  600
EEVFALEREG EFDKFAPYRK KLNNRMLLWH GSRFTNFFGK GIYFADLVSK SAQYCYTDKK  660
NPVGLMLLSE VALGEVHELK KATYMDKPPK GKHSTKGLGK KIPQESEYVK WKDDVIVPCG  720
KPVPSNIKAS ELMYNEYIVY DKAQVKMQFL LKVRFHHKRK IPAGMPQGDK LQQFPGPARF  780
AAIHKVFGAS NVSKLLLHVP VHDRCEAVVT IAYEAQARIR DPVYGCVAHI FSLQQQVACL  840
QAQLMQVKAQ LAHQSLVDSR NIESTQWPGN VNGVTNFPNY PSYMNPISPQ SSLESIDHNC  900
SDIAMNMQEI QSSRDDFSYQ ACSKRRPYNG DLGELQALAL RMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	9e-38	LBD family protein