PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g280090.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 367aa MW: 39889.6 Da PI: 10.1519

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g280090.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.9e-16	71	158	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++++ ++ ++ +qCk++++ ++k+yk +k + + + s++p+f++l+ Pd.00g280090.m01 71 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMAAG--GGPSKWPFFERLD 158 7***********************************85444455566778****************997..67778****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MEEDDEIQSP ASGRSGSPES PRQNGRITVT VAVPSAQIPA PASQPQSKGL TLALPSQGQQ 60 GRSSGGGRED CWSEGATAVL IEAWGERYLE LSRGNLKQKH WKEVADVVSS REDYGKTPKT 120 DIQCKNRIDT VKKKYKLEKS KMAAGGGPSK WPFFERLDHL IGPSSAAKVG PGSGGGGGFL 180 AHNQKVPMGM PVGVRPGQYF GQRDSKREVK TRPRSLVDWD SDESGELSPF SIDNEVFERK 240 RRRRTVLPEA NVNNAGGVGK GGVGTKDGGV VREKGGGGWG SSVRELTRAI MKFGEAYEHA 300 ETAKLQQVVE MEKQRMKFAK ELELQRMQFF MKTQVEISQL KHGGGRRSGN GNAGNHHSNN 360 NNSDCSN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MEEDDEIQSP ASGRSGSPES PRQNGRITVT VAVPSAQIPA PASQPQSKGL TLALPSQGQQ  60
GRSSGGGRED CWSEGATAVL IEAWGERYLE LSRGNLKQKH WKEVADVVSS REDYGKTPKT  120
DIQCKNRIDT VKKKYKLEKS KMAAGGGPSK WPFFERLDHL IGPSSAAKVG PGSGGGGGFL  180
AHNQKVPMGM PVGVRPGQYF GQRDSKREVK TRPRSLVDWD SDESGELSPF SIDNEVFERK  240
RRRRTVLPEA NVNNAGGVGK GGVGTKDGGV VREKGGGGWG SSVRELTRAI MKFGEAYEHA  300
ETAKLQQVVE MEKQRMKFAK ELELQRMQFF MKTQVEISQL KHGGGRRSGN GNAGNHHSNN  360
NNSDCSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	243	RKRRR
2	239	245	RKRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-54	Trihelix family protein