PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g278530.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92123.9 Da    PI: 6.4328
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g278530.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-182683457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Pd.00g278530.m01 26 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 83
                      5789****************************************************97 PP
2START161.75.5e-511623692204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++
  Pd.00g278530.m01 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIE 253
                       7899******************************************************.7777777777***********999999999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+s+l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++l
  Pd.00g278530.m01 254 LIYTQTYAPSTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVL 346
                       ****************************************999999989999***************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + +++++ a+l++ +
  Pd.00g278530.m01 347 RPLYESSKVVAQRMTIAALRYIR 369
                       ******************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MAMAVAHHRE SSSGSSINKH LDAGKYVRYT SEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPRQI KVWFQNRRCR EKQRKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TAPTTDASCD SVVTTPQHSL RDANNPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSVGIFAIS QSCSGVAARA CGLVSLEPTK IAEILKDRPS WFRDCRSLEV  240
FTMFPAGNGG TIELIYTQTY APSTLAPARD FWTLRYTTSL DNGSFVVCER SLSGSGAGPN  300
AASAAQFVRA EMLPSGYLIR PCEGGGSIIH IVDHLNLEAW SVPEVLRPLY ESSKVVAQRM  360
TIAALRYIRQ IAQETSGEVV YSLGRQPAVL RTFSQRLIRG FNDAVNGFSD DGWSLINCDG  420
AEDVIIAVNS TKNLTTSNPA NSLALLGGGV LCAKASMLLQ NVPPAVLVRF LREHRSEWAD  480
FNVDAYSAAS LKAGSYAYPG MRPTRFTGGQ IIMPLGHTIE HEELLEVVRL EGHSLTQEDA  540
FASRDIHLLQ ICSGVDENAV GACSELVFAP IDEMFPDDAP LVPSGFRIIP LDSKTSDSKD  600
TLATHRTLDL TSSLEVGSTT NNAAGELSSF HNTRSVLTIA FQFPFESSLQ ENVATMARQY  660
VRSVISSVQR VAMAISPSGL SPSVGGPKLS PGSPEALTLA HWICQSYSYH VGAELLRPDS  720
LGGDSMLKHL WHHQDAILCC SLKSLPVFIF ANQAGLDMLE TTLVALQDIS LDKIFDECGR  780
KTLCADFAKL MNQGFAHLPA GICMSTMGRH VSYEQAVAWK VLAAEENSVH CLAFSFMNWS  840
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein